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Also known as the pennant-fish and threadfin trevally. [4] African tigerfish: Hydrocynus vittatus: Alabama bass: Micropterus henshalli: Alabama shad: Alosa alabamae: Albacore: Thunnus alalunga: Alewife: Alosa pseudoharengus: Alligator gar: Atractosteus spatula: Largest exclusively freshwater fish found in North America, measuring 8 to 10 feet ...
The proper identification of fish specimens with DNA barcoding methods relies heavily on the quality and species coverage of available sequence databases. A fish reference database is an electronic database that typically contains DNA barcodes, images, and geospatial coordinates of examined fish specimens.
Megaselia abdita, scuttle fly (transcriptome 2013 [397]) Family Psychodidae (drain flies) Clogmia albipunctata, moth midge (transcriptome 2013 [397]) Family Sarcophagidae (flesh flies) Sarcophaga Bullata, Flesh fly (2019 [398]) Family Syrphidae (hoverflies) Episyrphus balteatus, hoverfly (transcriptome 2011 [399]) Order Hemiptera
FishBase is a global species database of fish species (specifically finfish). [1] It is the largest and most extensively accessed online database on adult finfish on the web. [ 2 ] Over time it has "evolved into a dynamic and versatile ecological tool" that is widely cited in scholarly publications.
One approach maps sequence reads onto a reference genome, either of the organism itself (whose transcriptome is being studied) or of a closely related species. The other approach, de novo transcriptome assembly , uses software to infer transcripts directly from short sequence reads and is used in organisms with genomes that are not sequenced.
RNA-Seq (named as an abbreviation of RNA sequencing) is a technique that uses next-generation sequencing to reveal the presence and quantity of RNA molecules in a biological sample, providing a snapshot of gene expression in the sample, also known as transcriptome.
There are over 700 terrestrial animals, 200 freshwater fish species, 1,000 marine fish and thousands of terrestrial insects and other invertebrates that inhabit the state. [2] Florida's peninsular geography spans from subtropical to tropical zones, which, combined with its distinctive geology and climate, contribute to habitat diversity and an ...
In addition, unlike genome sequencing, transcriptome sequencing can be strand-specific, due to the possibility of both sense and antisense transcripts. Finally, it can be difficult to reconstruct and tease apart all splicing isoforms. [9] Short read assemblers generally use one of two basic algorithms: overlap graphs and de Bruijn graphs. [10]