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OCRopus is a free document analysis and optical character recognition (OCR) system released under the Apache License v2.0 with a very modular design using command-line interfaces. OCRopus is developed under the lead of Thomas Breuel from the German Research Centre for Artificial Intelligence in Kaiserslautern , Germany and was sponsored by Google .
A set of books extracted from the Project Gutenberg books library Text Natural Language Processing 2019 Jack W et al. Deepmind Mathematics: Mathematical question and answer pairs. Text Natural Language Processing 2018 [115] D Saxton et al. Anna's Archive: A comprehensive archive of published books and papers None 100,356,641 Text, epub, PDF
Version 0.2 of October 2016, supports the algorithms BWA-MEM, BWA-backtrack, and BWA-ALN. All of them work with single-reads and paired-end reads. Yes Low quality bases trimming Yes Yes Free, GPL 3 [57] 2016 SSAHA, SSAHA2 Fast for a small number of variants Proprietary, freeware for academic and noncommercial use Stampy For Illumina reads.
SciPy (pronounced / ˈ s aɪ p aɪ / "sigh pie" [2]) is a free and open-source Python library used for scientific computing and technical computing. [3]SciPy contains modules for optimization, linear algebra, integration, interpolation, special functions, FFT, signal and image processing, ODE solvers and other tasks common in science and engineering.
Python (programming language) scientific libraries (36 P) Pages in category "Python (programming language) libraries" The following 43 pages are in this category, out of 43 total.
scikit-learn (formerly scikits.learn and also known as sklearn) is a free and open-source machine learning library for the Python programming language. [3] It features various classification, regression and clustering algorithms including support-vector machines, random forests, gradient boosting, k-means and DBSCAN, and is designed to interoperate with the Python numerical and scientific ...
fastqp Simple FASTQ quality assessment using Python. Kraken: [9] A set of tools for quality control and analysis of high-throughput sequence data. HTSeq [10] The Python script htseq-qa takes a file with sequencing reads (either raw or aligned reads) and produces a PDF file with useful plots to assess the technical quality of a run.
Pileup format is a text-based format for summarizing the base calls of aligned reads to a reference sequence. This format facilitates visual display of SNP /indel calling and alignment. It was first used by Tony Cox and Zemin Ning at the Wellcome Trust Sanger Institute , and became widely known through its implementation within the SAMtools ...