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Finally, splice sites (sequences immediately surrounding the exon-intron boundaries) can also be considered as consensus sequences. Thus a consensus sequence is a model for a putative DNA binding site: it is obtained by aligning all known examples of a certain recognition site and defined as the idealized sequence that represents the ...
The first one describes a bias and an asymmetric mutational pressure on each DNA strand during replication and transcription. [4] [11] Due to the asymmetric nature of the replication process, an unequal mutational frequency and DNA repair efficiency during the replication process can introduce more mutations in one strand as compared to the ...
Origins in budding yeast are defined by the autonomously replicating sequence (ARS), a short stretch of DNA (100-200 bp) that can initiate replication when transferred to any sequence of DNA. [3] [4] The ARS contains several specific sequence elements. One of these is the A element (ACS), an 11 bp consensus sequence rich in adenines and ...
The TATA box consensus sequence is TATAWAW, where W is either A or T. In molecular biology, the TATA box (also called the Goldberg–Hogness box) [1] is a sequence of DNA found in the core promoter region of genes in archaea and eukaryotes. [2] The bacterial homolog of the TATA box is called the Pribnow box which has a shorter consensus sequence.
Termination requires that the progress of the DNA replication fork must stop or be blocked. Termination at a specific locus, when it occurs, involves the interaction between two components: (1) a termination site sequence in the DNA, and (2) a protein which binds to this sequence to physically stop DNA replication.
Element A is highly conserved, consisting of the consensus sequence: 5'- T/A T T T A Y R T T T T/A -3' (where Y is either pyrimidine and R is either purine). When this element is mutated, the ARS loses all activity. As seen above the ARS are considerably A-T rich which makes it easy for replicative proteins to disrupt the H-bonding in that area.
More than five decades ago, Jacob, Brenner, and Cuzin proposed the replicon hypothesis to explain the regulation of chromosomal DNA synthesis in E. coli. [18] The model postulates that a diffusible, trans-acting factor, a so-called initiator, interacts with a cis-acting DNA element, the replicator, to promote replication onset at a nearby origin.
The replicator is the entire DNA sequence (including, but not limited to the origin of replication) required to direct the initiation of DNA replication. The initiator is the protein that recognizes the replicator and activates replication initiation. [1]