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  2. Protein–protein interaction prediction - Wikipedia

    en.wikipedia.org/wiki/Proteinprotein...

    Protein–protein interaction prediction is a field combining bioinformatics and structural biology in an attempt to identify and catalog physical interactions between pairs or groups of proteins. Understanding protein–protein interactions is important for the investigation of intracellular signaling pathways, modelling of protein complex ...

  3. List of protein subcellular localization prediction tools

    en.wikipedia.org/wiki/List_of_protein_sub...

    This list of protein subcellular localisation prediction tools includes software, databases, and web services that are used for protein subcellular localization prediction. Some tools are included that are commonly used to infer location through predicted structural properties, such as signal peptide or transmembrane helices , and these tools ...

  4. Protein–DNA interaction site predictor - Wikipedia

    en.wikipedia.org/wiki/Protein–DNA_interaction...

    DP-Bind combines multiple methods to make a consensus prediction based on the profile of evolutionary conservation and properties of the input protein sequence. Profile of evolutionary conservation is automatically generated by the web-server. Knowledge of the protein structure is not required. [7]

  5. IBIS (server) - Wikipedia

    en.wikipedia.org/wiki/IBIS_(server)

    IBIS (server) (Inferred Biomolecular Interaction Server) is a server developed at National Institutes of Health. It reports, predicts and integrates multiple types of conserved interactions for protein.

  6. Predictprotein - Wikipedia

    en.wikipedia.org/wiki/Predictprotein

    PredictProtein (PP) is an automatic service that searches up-to-date public sequence databases, creates alignments, and predicts aspects of protein structure and function. Users send a protein sequence and receive a single file with results from database comparisons and prediction methods.

  7. List of protein-ligand docking software - Wikipedia

    en.wikipedia.org/wiki/List_of_protein-ligand...

    The number of notable protein-ligand docking programs currently available is high and has been steadily increasing over the last decades. The following list presents an overview of the most common notable programs, listed alphabetically, with indication of the corresponding year of publication, involved organisation or institution, short description, availability of a webservice and the license.

  8. List of protein secondary structure prediction programs

    en.wikipedia.org/wiki/List_of_protein_secondary...

    server download: 2011 GOR: Information theory/Bayesian inference: Many implementations: Basic GOR GOR V: 2002 (GOR V) Jpred: Multiple Neural network assignment from PSI-BLAST and HMMER profiles. Predicts secondary structure and solvent accessibility: Webserver: server and API: 1998 PredictProtein: Profile-based neural network: Webserver: server ...

  9. ProBiS - Wikipedia

    en.wikipedia.org/wiki/ProBiS

    ProBiS is a computer software which allows prediction of binding sites and their corresponding ligands for a given protein structure. Initially ProBiS was developed as a ProBiS algorithm by Janez Konc and Dušanka Janežič in 2010 [1] and is now available as ProBiS server, ProBiS CHARMMing server, ProBiS algorithm and ProBiS plugin.

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