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In computational biology, protein pK a calculations are used to estimate the pK a values of amino acids as they exist within proteins.These calculations complement the pK a values reported for amino acids in their free state, and are used frequently within the fields of molecular modeling, structural bioinformatics, and computational biology.
The value of pK a also depends on molecular structure of the acid in many ways. For example, Pauling proposed two rules: one for successive pK a of polyprotic acids (see Polyprotic acids below), and one to estimate the pK a of oxyacids based on the number of =O and −OH groups (see Factors that affect pK a values below).
For example, the acid may be acetic acid and the salt may be sodium acetate. The Henderson–Hasselbalch equation relates the pH of a solution containing a mixture of the two components to the acid dissociation constant, K a of the acid, and the concentrations of the species in solution. [6]
For example, acetic acid is a weak acid which has a = 1.75 x 10 −5. Its conjugate base is the acetate ion with K b = 10 −14 / K a = 5.7 x 10 −10 (from the relationship K a × K b = 10 −14 ), which certainly does not correspond to a strong base.
In chemistry, biochemistry, and pharmacology, a dissociation constant (K D) is a specific type of equilibrium constant that measures the propensity of a larger object to separate (dissociate) reversibly into smaller components, as when a complex falls apart into its component molecules, or when a salt splits up into its component ions.
In cell biology, protein kinase A (PKA) is a family of serine-threonine kinase [1] whose activity is dependent on cellular levels of cyclic AMP (cAMP). PKA is also known as cAMP-dependent protein kinase (EC 2.7.11.11). PKA has several functions in the cell, including regulation of glycogen, sugar, and lipid metabolism.
Bis-tris methane is an organic tertiary amine with labile protons having a pKa of 6.46 at 25 °C. It is an effective buffer between the pH 5.8 and 7.2. Bis-tris methane binds strongly to Cu and Pb ions as well as, weakly, to Mg, Ca, Mn, Co, Ni, Zn and Cd.
For example, block copolymers often form micelles, as will star polymers and branched polymers. However, star and branched polymers can form rod or worm-shaped micelles rather than the typical spheres. Brush polymers are usually used for modifying surfaces since their structure doesn’t allow them to form a larger structure like a micelle. [1]