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  2. Gene Codes Corporation - Wikipedia

    en.wikipedia.org/wiki/Gene_Codes_Corporation

    Gene Codes Corporation was founded in 1988 in Ann Arbor, Michigan. In 1991, the DNA sequence assembly and analysis software, Sequencher, was released. By 1997, nearly every major pharmaceutical company and commercial genomics company in the world was standardized on Sequencher, as well as the majority of labs at major academic centers.

  3. List of RNA-Seq bioinformatics tools - Wikipedia

    en.wikipedia.org/wiki/List_of_RNA-Seq...

    Kraken: [9] A set of tools for quality control and analysis of high-throughput sequence data. HTSeq [10] The Python script htseq-qa takes a file with sequencing reads (either raw or aligned reads) and produces a PDF file with useful plots to assess the technical quality of a run. mRIN [11] - Assessing mRNA integrity directly from RNA-Seq data.

  4. Dot plot (bioinformatics) - Wikipedia

    en.wikipedia.org/wiki/Dot_plot_(bioinformatics)

    Dot plot (bioinformatics) A DNA dot plot of a human zinc finger transcription factor (GenBank ID NM_002383), showing regional self-similarity. The main diagonal represents the sequence's alignment with itself; lines off the main diagonal represent similar or repetitive patterns within the sequence. In bioinformatics a dot plot is a graphical ...

  5. DNADynamo - Wikipedia

    en.wikipedia.org/wiki/DNADynamo

    Website. bluetractorsoftware.co.uk. DNADynamo is a commercial DNA sequence analysis software package produced by Blue Tractor Software Ltd [1] that runs on Microsoft Windows, Mac OS X and Linux [2] It is used by molecular biologists [3] to analyze DNA and Protein sequences. A free demo is available from the software developers website.

  6. Sequence analysis - Wikipedia

    en.wikipedia.org/wiki/Sequence_analysis

    Sequence analysis. In bioinformatics, sequence analysis is the process of subjecting a DNA, RNA or peptide sequence to any of a wide range of analytical methods to understand its features, function, structure, or evolution. It can be performed on the entire genome, transcriptome or proteome of an organism, and can also involve only selected ...

  7. List of sequence alignment software - Wikipedia

    en.wikipedia.org/wiki/List_of_sequence_alignment...

    2006. MegAlign Pro (Lasergene Molecular Biology) Software to align DNA, RNA, protein, or DNA + protein sequences via pairwise and multiple sequence alignment algorithms including MUSCLE, Mauve, MAFFT, Clustal Omega, Jotun Hein, Wilbur-Lipman, Martinez Needleman-Wunsch, Lipman-Pearson and Dotplot analysis. Both.

  8. DNA sequencer - Wikipedia

    en.wikipedia.org/wiki/DNA_sequencer

    A DNA sequencer is a scientific instrument used to automate the DNA sequencing process. Given a sample of DNA, a DNA sequencer is used to determine the order of the four bases: G (guanine), C (cytosine), A (adenine) and T (thymine). This is then reported as a text string, called a read.

  9. GeneNetwork - Wikipedia

    en.wikipedia.org/wiki/GeneNetwork

    GeneNetwork. GeneNetwork is a combined database and open-source bioinformatics data analysis software resource for systems genetics. [1] This resource is used to study gene regulatory networks that link DNA sequence differences to corresponding differences in gene and protein expression and to variation in traits such as health and disease risk.