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Cytochrome b is commonly used as a region of mitochondrial DNA for determining phylogenetic relationships between organisms, due to its sequence variability. It is considered to be most useful in determining relationships within families and genera. Comparative studies involving cytochrome b have resulted in new classification schemes and have ...
Location of the MT-CYB gene in the human mitochondrial genome (coral box).. Cytochrome b is a protein that in humans is encoded by the MT-CYB gene. [5] Its gene product is a subunit of the respiratory chain protein ubiquinol–cytochrome c reductase (UQCR, complex III or cytochrome bc 1 complex), which consists of the products of one mitochondrially encoded gene, MT-CYB (mitochondrial ...
DNADynamo is a general purpose DNA and Protein sequence analysis package that can carry out most of the functions required by a standard research molecular biology laboratory DNA and Protein Sequence viewing, editing and annotating; Contig assembly and chromatogram editing including comparison to a reference sequence to identify mutations
In bioinformatics, sequence analysis is the process of subjecting a DNA, RNA or peptide sequence to any of a wide range of analytical methods to understand its features, function, structure, or evolution. It can be performed on the entire genome, transcriptome or proteome of an organism, and can also involve only selected segments or regions ...
Complex III itself is composed of several subunits, one of which is a b-type cytochrome while another one is a c-type cytochrome. Both domains are involved in electron transfer within the complex. Complex IV contains a cytochrome a/a3-domain that transfers electrons and catalyzes the reaction of oxygen to water.
Alignment Editor ― Within MEGA, the Alignment Editor is a tool that may be used for editing and building multiple sequence alignments. The Alignment Editor in MEGA includes an integrated tool for both ClustalW and MUSCLE programs. All actions take place in the Analysis Explorer, which can be found in the main menu of MEGA.
The ARB Project is a free software package for the phylogenetic analysis of rRNA and other biological sequences including DNA and protein sequence. It simplifies the import and assembly of genetic sequences from any organisms with the use of an automated aligner.
Collaborative project SOAP Suite: Suite of tools for assembly, alignment, and analysis of short read next generation sequencing data Unix/Linux, macOS: GPL: BGI: Staden Package: Sequence assembly, editing, and analysis, mainly consisting of gap4, gap5, and spin. Written in C, C++, Fortran and Tcl. Linux, macOS, Windows: BSD