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The 1000 Genomes Project (1KGP), taken place from January 2008 to 2015, was an international research effort to establish the most detailed catalogue of human genetic variation at the time. Scientists planned to sequence the genomes of at least one thousand anonymous healthy participants from a number of different ethnic groups within the ...
Much of this data was deposited through the 1000 Genomes Project. In June 2011, the data contained within the SRA passed 100 Terabases of DNA in volume. [2] The preferred data format for files submitted to the SRA is the BAM format, which is capable of storing both aligned and unaligned reads. [6]
The format supports short and long reads (up to 128 Mbp [3]) produced by different sequencing platforms and is used to hold mapped data within the Genome Analysis Toolkit (GATK) and across the Broad Institute, the Wellcome Sanger Institute, and throughout the 1000 Genomes Project.
The Variant Call Format or VCF is a standard text file format used in bioinformatics for storing gene sequence or DNA sequence variations. The format was developed in 2010 for the 1000 Genomes Project and has since been used by other large-scale genotyping and DNA sequencing projects.
Almost half of this data was deposited in relation to the 1000 Genomes Project [23] wherein the researchers published their sequence data to the SRA in real-time. [26] In total, as of September 2010, 65% of the Sequence Read Archive was human genomic sequence, with another 16% relating to human metagenome sequence reads. [23]
Download QR code; In other projects ... 1=Worldwide locations of population samples with the whole genome data from the 1000 Genome Project. Each circle represents ...
1000 Genomes Project: launched in January 2008. The genomes of more than a thousand anonymous participants from a number of different ethnic groups were analyzed and made publicly available. EggNOG Database: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. It provides ...
The Genomes OnLine Database (GOLD) is a web-based resource for comprehensive information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. [1] Since 2011, the GOLD database has been run by the DOE Joint Genome Institute