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The McDonald–Kreitman test [1] is a statistical test often used by evolutionary and population biologists to detect and measure the amount of adaptive evolution within a species by determining whether adaptive evolution has occurred, and the proportion of substitutions that resulted from positive selection (also known as directional selection).
Two useful introductions to the fundamental theory underlying the unit of selection issue and debate, which also present examples of multi-level selection from the entire range of the biological hierarchy (typically with entities at level N-1 competing for increased representation, i.e., higher frequency, at the immediately higher level N, e.g., organisms in populations or cell lineages in ...
Selection acts on variation in phenotypes, which are often the result of mutations in protein-coding genes. The genetic code is written in DNA sequences as codons , groups of three nucleotides . Each codon represents a single amino acid in a protein chain.
Frequency-dependent selection may explain the high degree of polymorphism in the MHC. [12] In behavioral ecology, negative frequency-dependent selection often maintains multiple behavioral strategies within a species. A classic example is the Hawk-Dove model of interactions among individuals in a population.
The mechanisms of evolution focus mainly on mutation, genetic drift, gene flow, non-random mating, and natural selection. Mutation: Mutation [12] is a change in the DNA sequence inside a gene or a chromosome of an organism. Most mutations are deleterious, or neutral; i.e. they can neither harm nor benefit, but can also be beneficial sometimes.
Phylogenetic comparative methods (PCMs) use information on the historical relationships of lineages (phylogenies) to test evolutionary hypotheses.The comparative method has a long history in evolutionary biology; indeed, Charles Darwin used differences and similarities between species as a major source of evidence in The Origin of Species.
Mutationism, along with other alternatives to Darwinism like Lamarckism and orthogenesis, was discarded by most biologists as they came to see that Mendelian genetics and natural selection could readily work together; mutation took its place as a source of the genetic variation essential for natural selection to work on. However, mutationism ...
The neutral theory allows for the possibility that most mutations are deleterious, but holds that because these are rapidly purged by natural selection, they do not make significant contributions to variation within and between species at the molecular level. Mutations that are not deleterious are assumed to be mostly neutral rather than ...