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KEGG (Kyoto Encyclopedia of Genes and Genomes) is a collection of databases dealing with genomes, biological pathways, diseases, drugs, and chemical substances.KEGG is utilized for bioinformatics research and education, including data analysis in genomics, metagenomics, metabolomics and other omics studies, modeling and simulation in systems biology, and translational research in drug development.
Each article at WikiPathways is dedicated to a particular pathway. Many types of molecular pathways are covered, including metabolic, [7] signaling, regulatory, etc. and the supported [8] species include human, mouse, zebrafish, fruit fly, C. elegans, yeast, rice and arabidopsis, [9] as well as bacteria and plant species.
It is calculated adding up the importance measures of each of the matched metabolites and then dividing by the sum of the importance measures of all metabolites in each pathway. To begin a session on MetPA users must first have a list of significant compounds derived from a metabolomic tests or compounds and concentration data with information ...
Pathway resources and types of pathway analysis using databases like KEGG, Reactome and WikiPathways. [1]Pathway is the term from molecular biology for a curated schematic representation of a well characterized segment of the molecular physiological machinery, such as a metabolic pathway describing an enzymatic process within a cell or tissue or a signaling pathway model representing a ...
It links gene information to phenotypic information from microbial pathogens on their hosts. Information is manually curated from peer-reviewed literature. RGD Rat Genome Database: genomic and phenotype data for Rattus norvegicus; PomBase database: manually curated phenotypic data for the yeast Schizosaccharomyces pombe
KEGG: Kyoto Encyclopedia of Genes and Genomes Kyoto University Bioinformatics Center: Compounds Glycans (also enzymes, reactions, pathways) CAS ChEBI ChEMBL MASSBANK NIKKAJI PubChem PDB-CCD "KEGG". K i Database: PDSP ligand binding "Ki Database". KNApSAcK Nara Institute of Science and Technology: InChI CAS SMILES organisms C00 "KNApSAcK". LINCS
The ‘KEGG Organisms’ section, which is divided into eukaryotes and prokaryotes, encompasses many organisms for which gene and DNA information can be searched by typing in the enzyme of choice. BioCyc, EcoCyc, and MetaCyc : BioCyc Is a collection of 3,000 pathway/genome databases (as of Oct 2013), with each database dedicated to one organism.
Reactome is a free online database of biological pathways. [ 1 ] [ 2 ] [ 3 ] It is manually curated and authored by PhD-level biologists, in collaboration with Reactome editorial staff. The content is cross-referenced to many bioinformatics databases.