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  2. Comparison of software for molecular mechanics modeling

    en.wikipedia.org/wiki/Comparison_of_software_for...

    High performance GPU-accelerated ab initio molecular dynamics and TD/DFT software package for very large molecular or even nanoscale systems. Runs on NVIDIA GPUs and 64-bit Linux, has heavily optimized CUDA code. Proprietary, trial licenses available PetaChem LLC: TINKER: I Yes Yes Yes Yes I I Yes Yes Software tools for molecular design-Tinker ...

  3. SnapPea - Wikipedia

    en.wikipedia.org/wiki/SnapPea

    SnapPea is free software designed to help mathematicians, in particular low-dimensional topologists, study hyperbolic 3-manifolds. The primary developer is Jeffrey Weeks, who created the first version [1] as part of his doctoral thesis, [2] supervised by William Thurston. It is not to be confused with the unrelated android malware with the same ...

  4. Symplectic manifold - Wikipedia

    en.wikipedia.org/wiki/Symplectic_manifold

    Symplectic manifolds arise from classical mechanics; in particular, they are a generalization of the phase space of a closed system. [1] In the same way the Hamilton equations allow one to derive the time evolution of a system from a set of differential equations, the symplectic form should allow one to obtain a vector field describing the flow of the system from the differential of a ...

  5. Hamiltonian mechanics - Wikipedia

    en.wikipedia.org/wiki/Hamiltonian_mechanics

    However, the Hamiltonian still exists. In the case where the cometric is degenerate at every point q of the configuration space manifold Q, so that the rank of the cometric is less than the dimension of the manifold Q, one has a sub-Riemannian manifold. The Hamiltonian in this case is known as a sub-Riemannian Hamiltonian. Every such ...

  6. Momentum map - Wikipedia

    en.wikipedia.org/wiki/Momentum_map

    An -action on a symplectic manifold (,) is called Hamiltonian if it is symplectic and if there exists a momentum map. A momentum map is often also required to be G {\displaystyle G} -equivariant , where G {\displaystyle G} acts on g ∗ {\displaystyle {\mathfrak {g}}^{*}} via the coadjoint action , and sometimes this requirement is included in ...

  7. Hamiltonian vector field - Wikipedia

    en.wikipedia.org/wiki/Hamiltonian_vector_field

    In mathematics and physics, a Hamiltonian vector field on a symplectic manifold is a vector field defined for any energy function or Hamiltonian. Named after the physicist and mathematician Sir William Rowan Hamilton , a Hamiltonian vector field is a geometric manifestation of Hamilton's equations in classical mechanics .

  8. Symplectomorphism - Wikipedia

    en.wikipedia.org/wiki/Symplectomorphism

    In contrast, isometries in Riemannian geometry must preserve the Riemann curvature tensor, which is thus a local invariant of the Riemannian manifold. Moreover, every function H on a symplectic manifold defines a Hamiltonian vector field X H, which exponentiates to a one-parameter group of Hamiltonian diffeomorphisms. It follows that the group ...

  9. Floer homology - Wikipedia

    en.wikipedia.org/wiki/Floer_homology

    Thus, the sum of the Betti numbers of that manifold yields the lower bound predicted by one version of the Arnold conjecture for the number of fixed points for a nondegenerate symplectomorphism. The SFH of a Hamiltonian symplectomorphism also has a pair of pants product that is a deformed cup product equivalent to quantum cohomology. A version ...