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CONN preprocessing pipeline includes steps designed to estimate and correct effects derived from subject motion within the scanner (realignment), correct spatial distortions due to inhomogeneities in the magnetic field (susceptibility distortion correction), correct for temporal misalignment across slices (slice timing correction), identify potential outlier images within each scanning session ...
Neuroimaging software is used to study the structure and function of the brain. To see an NIH Blueprint for Neuroscience Research funded clearinghouse of many of these software applications, as well as hardware, etc. go to the NITRC web site. 3D Slicer Extensible, free open source multi-purpose software for visualization and analysis.
Analysis of Functional NeuroImages (AFNI) is an open-source environment for processing and displaying functional MRI data—a technique for mapping human brain activity. AFNI is an agglomeration of programs that can be used interactively or flexibly assembled for batch processing using shell script .
The FMRIB Software Library, abbreviated FSL, is a software library containing image analysis and statistical tools for functional, structural and diffusion MRI brain imaging data. FSL is available as both precompiled binaries and source code for Apple and PC computers. It is freely available for non-commercial use.
FreeSurfer interoperates easily with the FMRIB Software Library (FSL), a comprehensive library for image analysis written by the Functional MRI of the Brain (FMRIB) group at Oxford, UK. The functional activation results obtained using either the FreeSurfer Functional Analysis Stream (FS-FAST) or the FSL tools can be overlaid onto inflated ...
COSMOS assumes a model-free susceptibility distribution and keeps full fidelity to the measured data. This method has been validated extensively in in vitro, ex vivo and phantom experiments. Quantitative susceptibility maps obtained from in vivo human brain imaging also showed high degree of agreement with previous knowledge about brain anatomy ...
Analyze is a software package developed by the Biomedical Imaging Resource (BIR) at Mayo Clinic for multi-dimensional display, processing, and measurement of multi-modality biomedical images. It is a commercial program and is used for medical tomographic scans from magnetic resonance imaging , computed tomography and positron emission tomography .
Harmonic phase (HARP) algorithm [1] is a medical image analysis technique capable of extracting and processing motion information from tagged magnetic resonance image (MRI) sequences. It was initially developed by N. F. Osman and J. L. Prince at the Image Analysis and Communications Laboratory at Johns Hopkins University. The method uses ...