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One way to visualize the similarity between two protein or nucleic acid sequences is to use a similarity matrix, known as a dot plot. These were introduced by Gibbs and McIntyre in 1970 [1] and are two-dimensional matrices that have the sequences of the proteins being compared along the vertical and horizontal axes.
Three exemplary genes matching the adjacent gene type definitions in a chromosome organized as a list Three exemplary genes matching the adjacent gene type definitions in a chromosome organized as a list. A scheduling task is used as an illustration, in which workflows are to be scheduled that require different numbers of heterogeneous ...
Mitranscriptome is a systematic list of long poly-adenylated Human RNA transcripts based on RNA-Seq data from more than 6,500 samples associated with a variety of cancer and tissue types. The database contains detailed gene expression analysis of over 91,000 genes, most are uncharacterized long RNAs.
Many EAs, such as the evolution strategy [10] [11] or the real-coded genetic algorithms, [12] [13] [8] work with real numbers instead of bit strings. This is due to the good experiences that have been made with this type of coding. [8] [14] The value of a real-valued gene can either be changed or redetermined.
The distance matrix can come from a number of different sources, including measured distance (for example from immunological studies) or morphometric analysis, various pairwise distance formulae (such as euclidean distance) applied to discrete morphological characters, or genetic distance from sequence, restriction fragment, or allozyme data.
Typical data structures that can be recombined with crossover are bit arrays, vectors of real numbers, or trees. The list of operators presented below is by no means complete and serves mainly as an exemplary illustration of this dyadic genetic operator type.
This page is a subsection of the list of sequence alignment software.. Multiple alignment visualization tools typically serve four purposes: Aid general understanding of large-scale DNA or protein alignments
The basic algorithm performs crossover and mutation at the bit level. Other variants treat the chromosome as a list of numbers which are indexes into an instruction table, nodes in a linked list, hashes, objects, or any other imaginable data structure. Crossover and mutation are performed so as to respect data element boundaries.