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2. Call graph - Wikipedia

   en.wikipedia.org/wiki/Call_graph

   NDepend:is a static analysis tool for .NET code. This tool supports a large number of code metrics, allows for visualization of dependencies using directed graphs and dependency matrix. PHP, Perl and Python. Devel::NYTProf : a Perl performance analyser and call chart generator; phpCallGraph : a call graph generator for PHP programs that uses ...

3. List of phylogenetics software - Wikipedia

   en.wikipedia.org/wiki/List_of_phylogenetics_software

   EzEditor is a java-based sequence alignment editor for rRNA and protein coding genes. It allows manipulation of both DNA and protein sequence alignments for phylogenetic analysis: Multiple sequence alignment and editing: Y.-S. Jeon, K. Lee, S.-C. Park, B.-S. Kim, Y.-J. Cho, S.-M. Ha, and J. Chun fastDNAml Optimized maximum likelihood ...

4. List of tools for static code analysis - Wikipedia

   en.wikipedia.org/wiki/List_of_tools_for_static...

   A code quality analysis tool that uses static code analysis. RIPS: 2020-02-17 (3.4) No; proprietary — — Java — — — PHP A static code analysis solution with many integration options for the automated detection of complex security vulnerabilities. SAST Online: 2022-03-07 (1.1.0) No; proprietary — — Java — — — Kotlin, APK

5. List of Unified Modeling Language tools - Wikipedia

   en.wikipedia.org/wiki/List_of_Unified_Modeling...

   Provides management of actors, use cases, user stories, declarative requirements, and test scenarios. Includes glossary, data dictionary, and issue tracking. Supports use case diagrams, auto-generated flow diagrams, screen mock-ups, and free-form diagrams. clang-uml: Un­known Un­known Un­known Un­known No C++ PlantUML, Mermaid.js

6. Sequence diagram - Wikipedia

   en.wikipedia.org/wiki/Sequence_diagram

   The diagram emphasizes events that cross the system boundary from actors to systems. A system sequence diagram should be done for the main success scenario of the use case, and frequent or complex alternative scenarios. There are two kinds of sequence diagrams: Sequence Diagram (SD): A regular version of sequence diagram describes how the ...

7. List of RNA-Seq bioinformatics tools - Wikipedia

   en.wikipedia.org/wiki/List_of_RNA-Seq...

   Kraken: [9] A set of tools for quality control and analysis of high-throughput sequence data. HTSeq [10] The Python script htseq-qa takes a file with sequencing reads (either raw or aligned reads) and produces a PDF file with useful plots to assess the technical quality of a run. mRIN [11] - Assessing mRNA integrity directly from RNA-Seq data.