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  2. Phylogenetic tree - Wikipedia

    en.wikipedia.org/wiki/Phylogenetic_tree

    The idea of a tree of life arose from ancient notions of a ladder-like progression from lower into higher forms of life (such as in the Great Chain of Being).Early representations of "branching" phylogenetic trees include a "paleontological chart" showing the geological relationships among plants and animals in the book Elementary Geology, by Edward Hitchcock (first edition: 1840).

  3. List of phylogenetic tree visualization software - Wikipedia

    en.wikipedia.org/wiki/List_of_phylogenetic_tree...

    an online tool for phylogenetic tree view (newick format) that allows multiple sequence alignments to be shown together with the trees (fasta format) EvolView [3] an online tool for visualizing, annotating and managing phylogenetic trees IcyTree [4] Client-side Javascript SVG viewer for annotated rooted trees. Also supports phylogenetic networks

  4. Phylogenetics - Wikipedia

    en.wikipedia.org/wiki/Phylogenetics

    The practice occurs given limited resources to compare and analyze every species within a target population. [17] Based on the representative group selected, the construction and accuracy of phylogenetic trees vary, which impacts derived phylogenetic inferences. [18]

  5. Biological data visualization - Wikipedia

    en.wikipedia.org/wiki/Biological_data_visualization

    A phylogenetic tree is a branching diagram or a tree showing the evolutionary relationships among various biological species or other entities based upon similarities and differences in their physical or genetic characteristics. It is a visual representation that shows the evolutionary history between a set of species or taxa during a specific ...

  6. Open Tree of Life - Wikipedia

    en.wikipedia.org/wiki/Open_Tree_of_Life

    The Open Tree of Life is an online phylogenetic tree of life – a collaborative effort, funded by the National Science Foundation. [2] [3] The first draft, including 2.3 million species, was released in September 2015. [4] The Interactive graph allows the user to zoom in to taxonomic classifications, phylogenetic trees, and information about a ...

  7. Cladogram - Wikipedia

    en.wikipedia.org/wiki/Cladogram

    Algorithms for cladograms or other types of phylogenetic trees include least squares, neighbor-joining, parsimony, maximum likelihood, and Bayesian inference. Biologists sometimes use the term parsimony for a specific kind of cladogram generation algorithm and sometimes as an umbrella term for all phylogenetic algorithms.

  8. Phylogenetic network - Wikipedia

    en.wikipedia.org/wiki/Phylogenetic_network

    Phylogenetic trees are a subset of phylogenetic networks. Phylogenetic networks can be inferred and visualised with software such as SplitsTree, [4] the R-package, phangorn, [5] [6] and, more recently, Dendroscope. A standard format for representing phylogenetic networks is a variant of Newick format which is extended to support networks as ...

  9. Outgroup (cladistics) - Wikipedia

    en.wikipedia.org/wiki/Outgroup_(cladistics)

    A simple cladogram showing the evolutionary relationships between four species: A, B, C, and D. Here, Species A is the outgroup, and Species B, C, and D form the ingroup. In cladistics or phylogenetics, an outgroup [1] is a more distantly related group of organisms that serves as a reference group when determining the evolutionary relationships of the ingroup, the set of organisms under study ...