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A log–log plot of y = x (blue), y = x 2 (green), and y = x 3 (red). Note the logarithmic scale markings on each of the axes, and that the log x and log y axes (where the logarithms are 0) are where x and y themselves are 1. Comparison of linear, concave, and convex functions when plotted using a linear scale (left) or a log scale (right).
A base-10 log scale is used for the Y-axis of the bottom left graph, and the Y-axis ranges from 0.1 to 1000. The top right graph uses a log-10 scale for just the X-axis, and the bottom right graph uses a log-10 scale for both the X axis and the Y-axis. Presentation of data on a logarithmic scale can be helpful when the data:
Such a diagram has pressure plotted on the vertical axis, with a logarithmic scale (thus the "log-P" part of the name), and the temperature plotted skewed, with isothermal lines at 45° to the plot (thus the "skew-T" part of the name). Plotting a hypothetical set of measurements with constant temperature for all altitudes would result in a line ...
A volcano plot is constructed by plotting the negative logarithm of the p value on the y axis (usually base 10). This results in data points with low p values (highly significant) appearing toward the top of the plot. The x axis is the logarithm of the fold change between the two conditions. The logarithm of the fold change is used so that ...
The log–linear type of a semi-log graph, defined by a logarithmic scale on the y-axis (vertical), and a linear scale on the x-axis (horizontal). Plotted lines are: y = 10 x (red), y = x (green), y = log(x) (blue). The linear–log type of a semi-log graph, defined by a logarithmic scale on the x axis, and a linear scale on
Sigmoid functions most often show a return value (y axis) in the range 0 to 1. Another commonly used range is from −1 to 1. A wide variety of sigmoid functions including the logistic and hyperbolic tangent functions have been used as the activation function of artificial neurons.
Moreover, complementary Python packages are available; SciPy is a library that adds more MATLAB-like functionality and Matplotlib is a plotting package that provides MATLAB-like plotting functionality. Although matlab can perform sparse matrix operations, numpy alone cannot perform such operations and requires the use of the scipy.sparse library.
Users can download the raw PAE data for all residue pairs in a custom JSON format for further analysis or visualization using a programming language such as Python. The format of the JSON file is as follows: