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List of protein structure prediction software; Category:Molecular dynamics software; Structural alignment software; Other. Compression of genomic sequencing data; Bioinformatics workflow management system; List of genetic engineering software; List of systems biology visualization software; List of systems biology modelling software; 2D gel ...
Name Description Site GESTALT Workbench graphical workbench for analysis of large-scale genomic sequence data N-Browse interactive graphical browser for biological networks
Software tools used for visualizing biological data range from simple, standalone programs to complex, integrated systems. An emerging trend is the blurring of boundaries between the visualization of 3D structures at atomic resolution, the visualization of larger complexes by cryo-electron microscopy , and the visualization of the location of ...
Mesquite is software for evolutionary biology, designed to help biologists analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern comparative analyses or population genetics, while others do non-phylogenetic multivariate analysis.
The vast majority of modern systems biology modeling software support SBML, which is the de facto standard for exchanging models of biological cellular processes. Some tools also support CellML , a standard used for representing physiological processes.
[33] Tajima's Neutrality Test — The purpose of Tajima's Neutrality Test is to assess the relationship between the number of segregating sites per site and nucleotide diversity. When alleles are selectively neutral the product 4Nv can be estimated in two ways. N represents the effective population size and v is the mutation rate per site.
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Ensembl Genomes: provides genome-scale data for bacteria, protists, fungi, plants and invertebrate metazoa, through a unified set of interactive and programmatic interfaces (using the Ensembl software platform) FlyBase: genome of the model organism Drosophila melanogaster; Gene Disease Database