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Swiss Mass Abacus is a calculator of peptide and glycopeptide masses. It is purposefully kept as simple as a basic calculator executing arithmetic operations. TOF-DS Proprietary: Software by Markes International used with BenchTOF time-of-flight mass spectrometers. TopFD Open source
The singular point at infinity can be removed (since this is a curve) by the normalization (integral closure) process. It turns out that after doing this, there is an open cover of the curve by two affine charts: the one already given by y 2 = f ( x ) {\displaystyle y^{2}=f(x)} and another one given by w 2 = v 2 g + 2 f ( 1 / v ...
Peptide bond formation via dehydration reaction. When two amino acids form a dipeptide through a peptide bond, [1] it is a type of condensation reaction. [2] In this kind of condensation, two amino acids approach each other, with the non-side chain (C1) carboxylic acid moiety of one coming near the non-side chain (N2) amino moiety of the other.
A curve with a triple point at the origin: x(t) = sin(2t) + cos(t), y(t) = sin(t) + cos(2t) In general, if all the terms of degree less than k are 0, and at least one term of degree k is not 0 in f, then curve is said to have a multiple point of order k or a k-ple point.
The possible peptide that has the most similar spectrum will have the highest chance to be the right sequence. However, the number of possible peptides may be large. For example, a precursor peptide with a molecular weight of 774 has 21,909,046 possible peptides. Even though it is done in the computer, it takes a long time. [17] [18]
Finally, the peptide side chains can also be modified covalently, e.g., phosphorylation; Aside from cleavage, phosphorylation is perhaps the most important chemical modification of proteins. A phosphate group can be attached to the sidechain hydroxyl group of serine, threonine and tyrosine residues, adding a negative charge at that site and ...
Then amongst singular points, an important distinction is made between a regular singular point, where the growth of solutions is bounded (in any small sector) by an algebraic function, and an irregular singular point, where the full solution set requires functions with higher growth rates.
Peptide fragmentation notation using the scheme of Roepstorff and Fohlman (1984). [5] A notation has been developed for indicating peptide fragments that arise from a tandem mass spectrum. [5] Peptide fragment ions are indicated by a, b, or c if the charge is retained on the N-terminus and by x, y or z if the charge is maintained on the C ...