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As of 2002, the number of classified green plant species was estimated to be around 370,000, however, there are probably many thousands more yet unclassified. [10] Despite this number, very few of these species have detailed DNA sequence information to date; 125,426 species in GenBank, as of 11 April 2012, [11] but most (>95%) having DNA sequence for only one or two genes. "...almost none of ...
Contains manual curations of public transcriptome datasets, focusing on medical and plant biology data. Individual experiments are normalised across the full database to allow comparison of gene expression across diverse experiments. Full functionality requires licence purchase, with free access to a limited functionality. RefEx [172] DDBJ: All
queryable-rna-seq-database Formally known as the Queryable RNA-Seq Database, this system is designed to simplify the process of RNA-seq analysis by providing the ability upload the result data from RNA-Seq analysis into a database, store it, and query it in many different ways.
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Avibase – the World Bird Database [4] Birds, distribution, taxonomy X Avibase is an extensive database information system about all birds of the world, containing over 27 million records about 10,000 species and 22,000 subspecies of birds, including distribution information for 20,000 regions, taxonomy, synonyms in several languages and more
The term transcriptome is a portmanteau of the words transcript and genome; it is associated with the process of transcript production during the biological process of transcription. The early stages of transcriptome annotations began with cDNA libraries published in the 1980s. Subsequently, the advent of high-throughput technology led to ...
It’s like facing criticism for being the least impactful Nobel Prize winner. Or the bottom of the class at Harvard. Or the slowest runner at the Olympics.
RNA-Seq data may be directly assembled into transcripts using sequence assembly.Two main categories of sequence assembly are often distinguished: . de novo transcriptome assembly - especially important when a reference genome is not available for a given species.