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Global access to the data is provided by the websites of the wwPDB member organisations (PDBe, [3] PDBj, [4] RCSB PDB, [5] and BMRB [6]). The PDB is a key in areas of structural biology, such as structural genomics. Most major scientific journals and some funding agencies now require scientists to submit their structure data to the PDB.
Research Collaboratory for Structural Bioinformatics Protein Database (RCSB PDB) Protein Data Bank in Europe (PDBe) Protein Data Bank Japan (PDBj) Biological Magnetic Resonance Data Bank (BMRB) Electron Microscopy Data Bank (EMDB). The wwPDB was founded in 2003 by RCSB PDB (USA), PDBe (Europe) and PDBj (Japan). In 2006 BMRB (USA) joined the wwPDB.
Protein Data Bank: Protein DataBank in Europe (PDBe), [18] ProteinDatabank in Japan (PDBj), [19] Research Collaboratory for Structural Bioinformatics (RCSB) [20] (PDB) Protein structure databases Structural Classification of Proteins (SCOP) Protein structure databases CATH database: Protein structure databases ModBase: Sali Lab, UCSF
The Protein Data Bank (PDB) file format is a textual file format describing the three-dimensional structures of molecules held in the Protein Data Bank, now succeeded by the mmCIF format. The PDB format accordingly provides for description and annotation of protein and nucleic acid structures including atomic coordinates, secondary structure ...
The data are typically obtained by X-ray crystallography or nuclear magnetic resonance spectroscopy (NMR spectroscopy), and submitted manually by structural biologists worldwide through PDB member organizations – PDBe, RCSB, PDBj and BMRB. The database can be accessed through the webpages of its members, including PDBe (housed at the EMBL-EBI).
PDBsum is a database that provides an overview of the contents of each 3D macromolecular structure deposited in the Protein Data Bank (PDB). [1] [2 ... "PDBsum home ...
In biology, a protein structure database is a database that is modeled around the various experimentally determined protein structures.The aim of most protein structure databases is to organize and annotate the protein structures, providing the biological community access to the experimental data in a useful way.
228994 Ensembl ENSG00000149658 ENSMUSG00000038848 UniProt Q9BYJ9 P59326 RefSeq (mRNA) NM_017798 NM_173761 RefSeq (protein) NP_060268 NP_776122 Location (UCSC) Chr 20: 63.2 – 63.22 Mb Chr 2: 180.55 – 180.56 Mb PubMed search Wikidata View/Edit Human View/Edit Mouse YTH domain family, member 1 is a protein that in humans is encoded by the YTHDF1 gene. See also N 6 -Methyladenosine References ...