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ELKI contains tSNE, also with Barnes-Hut approximation; scikit-learn, a popular machine learning library in Python implements t-SNE with both exact solutions and the Barnes-Hut approximation. Tensorboard, the visualization kit associated with TensorFlow, also implements t-SNE (online version) The Julia package TSne implements t-SNE
The second plot shows average distance to neighbours: larger distances are darker. The third plot predicts Republican (red) or Democratic (blue) party membership. The other plots each overlay the resulting map with predicted values on an input dimension: red means a predicted 'yes' vote on that bill, blue means a 'no' vote.
Matplotlib (portmanteau of MATLAB, plot, and library [3]) is a plotting library for the Python programming language and its numerical mathematics extension NumPy.It provides an object-oriented API for embedding plots into applications using general-purpose GUI toolkits like Tkinter, wxPython, Qt, or GTK.
Interpretation of PAE values allows scientists to understand the level of confidence in the predicted structure of a protein: Lower PAE values between residue pairs from different domains indicate that the model predicts well-defined relative positions and orientations for those domains.
Astropy is a collection of software packages written in the Python programming language and designed for use in astronomy. [2] The software is a single, free, core package for astronomical utilities due to the increasingly widespread usage of Python by astronomers, and to foster interoperability between various extant Python astronomy packages. [3]
In descriptive statistics and chaos theory, a recurrence plot (RP) is a plot showing, for each moment in time, the times at which the state of a dynamical system returns to the previous state at , i.e., when the phase space trajectory visits roughly the same area in the phase space as at time . In other words, it is a plot of
Q H = W + Q C = heat exchanged with the hot reservoir. η = W / (Q C + Q H) = thermal efficiency of the cycle If the cycle moves in a clockwise sense, then it is a heat engine that outputs work; if the cycle moves in a counterclockwise sense, it is a heat pump that takes in work and moves heat Q H from the cold reservoir to the hot reservoir.
A volcano plot is constructed by plotting the negative logarithm of the p value on the y axis (usually base 10). This results in data points with low p values (highly significant) appearing toward the top of the plot. The x axis is the logarithm of the fold change between the two conditions. The logarithm of the fold change is used so that ...