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Systems biology is the computational and mathematical analysis and modeling of complex biological systems. It is a biology-based interdisciplinary field of study that focuses on complex interactions within biological systems, using a holistic approach (holism instead of the more traditional reductionism) to biological research. [1]
A biological network is a method of representing systems as complex sets of binary interactions or relations between various biological entities. [1] In general, networks or graphs are used to capture relationships between entities or objects. [1]
Biological patterns such as animal markings, the segmentation of animals, and phyllotaxis are formed in different ways. [2]In developmental biology, pattern formation describes the mechanism by which initially equivalent cells in a developing tissue in an embryo assume complex forms and functions. [3]
The Systems Biology Markup Language (SBML) is a representation format, based on XML, for communicating and storing computational models of biological processes. [1] It is a free and open standard with widespread software support and a community of users and developers.
The NIST's definition of cloud computing describes IaaS as "where the consumer is able to deploy and run arbitrary software, which can include operating systems and applications. The consumer does not manage or control the underlying cloud infrastructure but has control over operating systems, storage, and deployed applications; and possibly ...
Computational biology is a specialized domain that often requires knowledge of computer programming. Galaxy aims to give biomedical researchers access to computational biology without also requiring them to understand computer programming. [13] [14] Galaxy does this by stressing a simple user interface [15] over the ability to build complex ...
A specialized form of the PhysiCell agent-based modeling platform that directly integrates Boolean signaling networks into cell Agents [19] multiplatform (C++) BSD-3: Yes, but only for reactions PhysiCell: A agent-based [20] modeling framework for multicellular systems biology. multiplatform (C++) BSD-3: Yes, but only for reactions PySCeS
Platform as a service (PaaS) or application platform as a service (aPaaS) or platform-based service is a cloud computing service model where users provision, instantiate, run and manage a modular bundle of a computing platform and applications, without the complexity of building and maintaining the infrastructure associated with developing and launching application(s), and to allow developers ...