Search results
Results From The WOW.Com Content Network
Phylogenetic networks can be inferred and visualised with software such as SplitsTree, [4] the R-package, phangorn, [5] [6] and, more recently, Dendroscope. A standard format for representing phylogenetic networks is a variant of Newick format which is extended to support networks as well as trees. [7]
An example of a neighbor-net phylogenetic network generated by SplitsTree v4.6.. NeighborNet [1] is an algorithm for constructing phylogenetic networks which is loosely based on the neighbor joining algorithm.
In the visualization of LGT events, for a given reticulate node, one incoming edge is usually drawn as an "acceptor" edge and all other incoming edges are drawn as "transfer" edges. Some programs (e.g. Dendroscope and SplitsTree) allow exactly one copy of the reticulate node to be labeled with ## to indicate that it corresponds to the acceptor ...
The group of packages strives to provide a cohesive collection of functions to deal with common data science tasks, including data import, cleaning, transformation and visualisation (notably with the ggplot2 package). The R Infrastructure packages [31] support coding and the development of R packages and as of 2021-05-04, Metacran [17] lists 16 ...
Reticulate evolution, or network evolution is the origination of a lineage through the partial merging of two ancestor lineages, leading to relationships better described by a phylogenetic network than a bifurcating tree. [1]
R is a programming language for statistical computing and data visualization. It has been adopted in the fields of data mining, bioinformatics and data analysis. [9] The core R language is augmented by a large number of extension packages, containing reusable code, documentation, and sample data. R software is open-source and free software.
A particular problem in the area of liquid-state thermodynamics is the sourcing of reliable thermodynamic constants. These constants are necessary for the successful prediction of the free energy state of the system; without this information it is impossible to model the equilibrium phases of the system.
The tidyverse is a collection of open source packages for the R programming language introduced by Hadley Wickham [1] and his team that "share an underlying design philosophy, grammar, and data structures" of tidy data. [2] Characteristic features of tidyverse packages include extensive use of non-standard evaluation and encouraging piping. [3 ...