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Comma-separated values (CSV) is a text file format that uses commas to separate values, and newlines to separate records. A CSV file stores tabular data (numbers and text) in plain text, where each line of the file typically represents one data record. Each record consists of the same number of fields, and these are separated by commas in the ...
Pandas (styled as pandas) is a software library written for the Python programming language for data manipulation and analysis. In particular, it offers data structures and operations for manipulating numerical tables and time series. It is free software released under the three-clause BSD license. [2]
Python is a high-level, general-purpose programming language. Its design philosophy emphasizes code readability with the use of significant indentation. [33] Python is dynamically type-checked and garbage-collected. It supports multiple programming paradigms, including structured (particularly procedural), object-oriented and functional ...
Hierarchical Data Format (HDF) is a set of file formats (HDF4, HDF5) designed to store and organize large amounts of data.Originally developed at the U.S. National Center for Supercomputing Applications, it is supported by The HDF Group, a non-profit corporation whose mission is to ensure continued development of HDF5 technologies and the continued accessibility of data stored in HDF.
The NCAR Command Language (NCL) is used to analyze and visualize data in netCDF files (among other formats). The Python programming language can access netCDF files with the PyNIO [14] module (which also facilitates access to a variety of other data formats). netCDF files can also be read with the Python module netCDF4-python, [15] and into a ...
Typical streams include log files, delimiter-separated values, or email messages, notably for email filtering. For example, an AWK program may take as input a stream of log statements, and for example send all to the console, write ones starting with WARNING to a "WARNING" file, and send an email to a sysadmin in case any line starts with ...
In a database, a table is a collection of related data organized in table format; consisting of columns and rows.. In relational databases, and flat file databases, a table is a set of data elements (values) using a model of vertical columns (identifiable by name) and horizontal rows, the cell being the unit where a row and column intersect. [1]
BEDTools: program allowing the manipulation of coordinate sets and the extraction of sequences from a BED file. [6] BEDOPS: a suite of tools for fast boolean operations on BED files. [8] BedTk: a faster alternative to BEDTools for a limited and specialized sub-set of operations. [9] covtobed: a tool to convert a BAM file into a BED coverage ...