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The TM-score indicates the similarity between two structures by a score between (,], where 1 indicates a perfect match between two structures (thus the higher the better). [1] Generally scores below 0.20 corresponds to randomly chosen unrelated proteins whereas structures with a score higher than 0.5 assume roughly the same fold. [2]
TM-align TM-score based protein structure alignment: Cα: Pair: nil: server and download: Y. Zhang & J. Skolnick: 2005 mTM-align Multiple protein structure alignment based on TM-align Cα Multi No server and download: R. Dong, Z. Peng, Y. Zhang & J. Yang 2018 VAST Vector Alignment Search Tool: SSE: Pair: nil: server: S. Bryant: 1996 PrISM
2 1 - - - - - 2008: 2009: North European Zone Formula 3 Cup: 1 additional bonus point for pole position and fastest race lap 25 20 16 14 12 10 8 6 4 3 2 1 - - - - - - - - 2009: 2009 Atlantic Championship: 1 additional bonus point for pole position and most positions gained in the race Not all race results counted towards the total championship ...
By the original design the GDT algorithm calculates 20 GDT scores, i.e. for each of 20 consecutive distance cutoffs (0.5 Å, 1.0 Å, 1.5 Å, ... 10.0 Å). [2] For structure similarity assessment it is intended to use the GDT scores from several cutoff distances, and scores generally increase with increasing cutoff.
All parameters correctly handle plurals (1 win, 2 wins etc.). w - the number of wins; l - the number of losses; d - the number of draws; otl - the number of overtime losses; t - the number of ties (for use in sports, such as cricket, where draws and ties are different results) nr - the number of no result outcomes
Name Description Knots [Note 1]Links References trRosettaRNA: trRosettaRNA is an algorithm for automated prediction of RNA 3D structure. It builds the RNA structure by Rosetta energy minimization, with deep learning restraints from a transformer network (RNAformer). trRosettaRNA has been validated in blind tests, including CASP15 and RNA-Puzzles, which suggests that the automated predictions ...
The score is greater than 0 if it is more likely to be a functional site than a random site, and less than 0 if it is more likely to be a random site than a functional site. [1] The sequence score can also be interpreted in a physical framework as the binding energy for that sequence.
Mallampati score: Class I and II of the modified mallampati scoring results in 0 points whereas a class III is given 1 point and a class IV 2 points. Movement of the neck: The ability to move the neck more than 90 degrees results in 0 points whereas a movement range of 80-90 degrees results in 1 point and a movement range below 80 degrees ...