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A cladogram (from Greek clados "branch" and gramma "character") is a diagram used in cladistics to show relations among organisms. A cladogram is not, however, an evolutionary tree because it does not show how ancestors are related to descendants, nor does it show how much they have changed, so many differing evolutionary trees can be ...
A phylogenetic tree, phylogeny or evolutionary tree is a graphical representation which shows the evolutionary history between a set of species or taxa during a specific time. [ 1 ] [ 2 ] In other words, it is a branching diagram or a tree showing the evolutionary relationships among various biological species or other entities based upon ...
The word is derived from the Greek φαίνω (phainō), "to show, to bring to light, make to appear" [6] + λόγος (), amongst others "study, discourse, reasoning" [7] and indicates that phenology has been principally concerned with the dates of first occurrence of biological events in their annual cycle.
Sequence similarity plots (SimPlots [39]), detection of intragenic and intergenic recombination events, bootscan analysis [40] and sequence similarity networks: SimPlot using different nucleotide/protein distance models; Phi, χ2 and NSS recombination tests; Sequence similarity network analysis: S. Samson, E. Lord, V. Makarenkov sowhat [41]
Cladogram (a branching tree diagram) illustrating the relationships of organisms within groups of taxa known as clades. The vertical line stem at the base represents the last common ancestor . The blue and orange subgroups are clades, each defined by a common ancestor stem at the base of its respective subgroup branch .
This was indeed the case; for example, Robert R. Sokal used the Caminalcules to investigate the ability of different numerical methods to estimate the true cladogram [3] as well as the consequences of introducing fossil species into a data set for cladistic and phenetic classifications. [4]
The requirement for a rank is a major difference between traditional and phylogenetic nomenclature. It has several consequences: it limits the number of nested levels at which names can be applied; it causes the endings of names to change if a group has its rank changed, even if it has precisely the same members (i.e. the same circumscription ...
Bayesian inference of phylogeny combines the information in the prior and in the data likelihood to create the so-called posterior probability of trees, which is the probability that the tree is correct given the data, the prior and the likelihood model.