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Maximum subarray problems arise in many fields, such as genomic sequence analysis and computer vision.. Genomic sequence analysis employs maximum subarray algorithms to identify important biological segments of protein sequences that have unusual properties, by assigning scores to points within the sequence that are positive when a motif to be recognized is present, and negative when it is not ...
The longest increasing subsequence has also been studied in the setting of online algorithms, in which the elements of a sequence of independent random variables with continuous distribution – or alternatively the elements of a random permutation – are presented one at a time to an algorithm that must decide whether to include or exclude ...
A longest common subsequence (LCS) is the longest subsequence common to all sequences in a set of sequences (often just two sequences). It differs from the longest common substring : unlike substrings, subsequences are not required to occupy consecutive positions within the original sequences.
The longest common substrings of a set of strings can be found by building a generalized suffix tree for the strings, and then finding the deepest internal nodes which have leaf nodes from all the strings in the subtree below it. The figure on the right is the suffix tree for the strings "ABAB", "BABA" and "ABBA", padded with unique string ...
Range minimum query reduced to the lowest common ancestor problem.. Given an array A[1 … n] of n objects taken from a totally ordered set, such as integers, the range minimum query RMQ A (l,r) =arg min A[k] (with 1 ≤ l ≤ k ≤ r ≤ n) returns the position of the minimal element in the specified sub-array A[l …
The subset sum problem (SSP) is a decision problem in computer science. In its most general formulation, there is a multiset of integers and a target-sum , and the question is to decide whether any subset of the integers sum to precisely . [1] The problem is known to be NP-complete.
The subset sum problem is a special case of the decision and 0-1 problems where each kind of item, the weight equals the value: =. In the field of cryptography, the term knapsack problem is often used to refer specifically to the subset sum problem. The subset sum problem is one of Karp's 21 NP-complete problems. [2]
The longest alternating subsequence problem has also been studied in the setting of online algorithms, in which the elements of are presented in an online fashion, and a decision maker needs to decide whether to include or exclude each element at the time it is first presented, without any knowledge of the elements that will be presented in the future, and without the possibility of recalling ...