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2. MicroRNA and microRNA target database - Wikipedia

   en.wikipedia.org/wiki/MicroRNA_and_microRNA...

   an integrated resource for microRNA-target interactions. database: website [14] PicTar: PicTar is Combinatorial microRNA target predictions. database, webserver, predictions: website [15] PITA: PITA, incorporates the role of target-site accessibility, as determined by base-pairing interactions within the mRNA, in microRNA target recognition.

3. TargetScan - Wikipedia

   en.wikipedia.org/wiki/TargetScan

   In bioinformatics, TargetScan is a web server that predicts biological targets of microRNAs (miRNAs) by searching for the presence of sites that match the seed region of each miRNA. [1] For many species, other types of sites, known as 3'-compensatory sites [1] are also identified.

4. List of protein subcellular localization prediction tools

   en.wikipedia.org/wiki/List_of_protein_sub...

   psRobot is a web-based tool for plant small RNA meta-analysis. psRobot computes stem-loop small RNA prediction, which aligns user uploaded sequences to the selected genome, extracts their predicted precursors, and predicts whether the precursors can fold into stem-loop shaped secondary structure. psRobot also computes small RNA target ...

5. CeRNA database - Wikipedia

   en.wikipedia.org/wiki/CeRNA_database

   database [4] ceRNAFunction: ceRNAFunction is a web server to predict lncRNA and protein functions from pan-cancer ceRNA networks using 13 functional terms (including: GO, KEGG, BIOCARTA, etc.). webserver [3] [5] Cupid: Cupid is a method for simultaneous prediction of miRNA-target interactions and their mediated competing endogenous RNA (ceRNA ...

6. MiRTarBase - Wikipedia

   en.wikipedia.org/wiki/MiRTarBase

   miRTarBase [1] is a curated database of MicroRNA-Target Interactions.As a database, miRTarBase has accumulated more than fifty thousand miRNA-target interactions (MTIs), which are collected by manually surveying pertinent literature after data mining of the text systematically to filter research articles related to functional studies of miRNAs.

7. StarBase (biological database) - Wikipedia

   en.wikipedia.org/wiki/StarBase_(biological_database)

   Download QR code; Print/export ... StarBase [2] is a database for decoding miRNA-mRNA, ... MicroRNA and microRNA target database; MicroRNA; Degradome sequencing;

8. RNA22 - Wikipedia

   en.wikipedia.org/wiki/RNA22

   Rna22 is a pattern-based algorithm for the discovery of microRNA target sites and the corresponding heteroduplexes. [1]The algorithm is conceptually distinct from other methods for predicting microRNA:mRNA heteroduplexes in that it does not use experimentally validated heteroduplexes for training, instead relying only on the sequences of known mature miRNAs that are found in the public databases.

9. List of RNA structure prediction software - Wikipedia

   en.wikipedia.org/wiki/List_of_RNA_structure...

   microRNA target gene prediction using a support vector machine. Yes: No: No: webserver [131] miRror: Based on the notion of a combinatorial regulation by an ensemble of miRNAs or genes. miRror integrates predictions from a dozen of miRNA resources that are based on complementary algorithms into a unified statistical framework: Yes: No: No