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2. MicroRNA and microRNA target database - Wikipedia

   en.wikipedia.org/wiki/MicroRNA_and_microRNA...

   an integrated resource for microRNA-target interactions. database: website [14] PicTar: PicTar is Combinatorial microRNA target predictions. database, webserver, predictions: website [15] PITA: PITA, incorporates the role of target-site accessibility, as determined by base-pairing interactions within the mRNA, in microRNA target recognition.

3. TargetScan - Wikipedia

   en.wikipedia.org/wiki/TargetScan

   In bioinformatics, TargetScan is a web server that predicts biological targets of microRNAs (miRNAs) by searching for the presence of sites that match the seed region of each miRNA. [1] For many species, other types of sites, known as 3'-compensatory sites [1] are also identified.

4. List of protein subcellular localization prediction tools

   en.wikipedia.org/wiki/List_of_protein_sub...

   psRobot is a web-based tool for plant small RNA meta-analysis. psRobot computes stem-loop small RNA prediction, which aligns user uploaded sequences to the selected genome, extracts their predicted precursors, and predicts whether the precursors can fold into stem-loop shaped secondary structure. psRobot also computes small RNA target ...

5. List of RNA structure prediction software - Wikipedia

   en.wikipedia.org/wiki/List_of_RNA_structure...

   microRNA target gene prediction using a support vector machine. Yes: No: No: webserver [131] miRror: Based on the notion of a combinatorial regulation by an ensemble of miRNAs or genes. miRror integrates predictions from a dozen of miRNA resources that are based on complementary algorithms into a unified statistical framework: Yes: No: No

6. CeRNA database - Wikipedia

   en.wikipedia.org/wiki/CeRNA_database

   database [4] ceRNAFunction: ceRNAFunction is a web server to predict lncRNA and protein functions from pan-cancer ceRNA networks using 13 functional terms (including: GO, KEGG, BIOCARTA, etc.). webserver [3] [5] Cupid: Cupid is a method for simultaneous prediction of miRNA-target interactions and their mediated competing endogenous RNA (ceRNA ...

7. StarBase (biological database) - Wikipedia

   en.wikipedia.org/wiki/StarBase_(biological_database)

   StarBase [2] is a database for decoding miRNA-mRNA, miRNA-lncRNA, [3] miRNA-sncRNA, ... MicroRNA and microRNA target database; MicroRNA; Degradome sequencing; References

8. MiRTarBase - Wikipedia

   en.wikipedia.org/wiki/MiRTarBase

   miRTarBase [1] is a curated database of MicroRNA-Target Interactions.As a database, miRTarBase has accumulated more than fifty thousand miRNA-target interactions (MTIs), which are collected by manually surveying pertinent literature after data mining of the text systematically to filter research articles related to functional studies of miRNAs.

9. PolymiRTS - Wikipedia

   en.wikipedia.org/wiki/PolymiRTS

   Polymorphism in microRNA Target Site (PolymiRTS) is a database of naturally occurring DNA ... MicroRNA; List of miRNA target prediction tools; References. a ...