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The idea of a tree of life arose from ancient notions of a ladder-like progression from lower into higher forms of life (such as in the Great Chain of Being).Early representations of "branching" phylogenetic trees include a "paleontological chart" showing the geological relationships among plants and animals in the book Elementary Geology, by Edward Hitchcock (first edition: 1840).
MNHN-Tree-Tools is an opensource phylogenetics inference software working on nucleic and protein sequences. Clustering of DNA or protein sequences and phylogenetic tree inference from a set of sequences. At the core it employs a distance-density based approach. Thomas Haschka, Loïc Ponger, Christophe Escudé and Julien Mozziconacci [25 ...
A phylogenetic tree in MEGA using a Neighbor Joining Method and Bootstrapping. The data sequences being used is from the study Initial diversification of living amphibians predated the breakup of Pangaea. MEGA has created captions using the Real-Time Caption Editor to be able to analyze the properties of the results of the phylogenetic tree.
Archaeopteryx is an interactive computer software program, written in Java, for viewing, editing, and analyzing phylogenetic trees.This type of program can be used for a variety of analyses of molecular data sets, but is particularly designed for phylogenomics.
TreeFam (Tree families database) is a database of phylogenetic trees of animal genes.It aims at developing a curated resource that gives reliable information about ortholog and paralog assignments, and evolutionary history of various gene families.
an online tool for phylogenetic tree view (newick format) that allows multiple sequence alignments to be shown together with the trees (fasta format) EvolView [3] an online tool for visualizing, annotating and managing phylogenetic trees IcyTree [4] Client-side Javascript SVG viewer for annotated rooted trees. Also supports phylogenetic networks