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  2. Chemical graph generator - Wikipedia

    en.wikipedia.org/wiki/Chemical_graph_generator

    A chemical graph generator is a software package to generate computer representations of chemical structures adhering to certain boundary conditions. The development of such software packages is a research topic of cheminformatics .

  3. Molecular graph - Wikipedia

    en.wikipedia.org/wiki/Molecular_graph

    In chemical graph theory and in mathematical chemistry, a molecular graph or chemical graph is a representation of the structural formula of a chemical compound in terms of graph theory. A chemical graph is a labeled graph whose vertices correspond to the atoms of the compound and edges correspond to chemical bonds.

  4. Simplified Molecular Input Line Entry System - Wikipedia

    en.wikipedia.org/wiki/Simplified_Molecular_Input...

    In terms of a graph-based computational procedure, SMILES is a string obtained by printing the symbol nodes encountered in a depth-first tree traversal of a chemical graph. The chemical graph is first trimmed to remove hydrogen atoms and cycles are broken to turn it into a spanning tree. Where cycles have been broken, numeric suffix labels are ...

  5. Molecular model - Wikipedia

    en.wikipedia.org/wiki/Molecular_model

    A given atom would have solid and hollow valence spikes. The solid rods clicked into the tubes forming a bond, usually with free rotation. These were and are very widely used in organic chemistry departments and were made so accurately that interatomic measurements could be made by ruler.

  6. List of molecular graphics systems - Wikipedia

    en.wikipedia.org/wiki/List_of_molecular_graphics...

    Build and visualize molecule and periodic systems (crystal, structures, fluids...), animate trajectories, visualize molecular orbitals, density, electrostatic potential... visualize graph such IR, NMR, dielectric and optical tensors. Molden: MM XRD: Proprietary, free use academic [12] Molecular Operating Environment (MOE) HM MD MM NA QM SMI XRD ...

  7. Template : Did you know nominations/Chemical graph generator

    en.wikipedia.org/.../Chemical_graph_generator

    Sources: "the DENDRAL program contains a structure GENERATOR as its core, abundantly constrained by a set of relevant heuristics. The GENERATOR is built upon a consideration of the conventional structure representation as a topological graph, i.e., the connectivity relations of a set of chemical atoms taken as nodes.

  8. Talk:Chemical graph generator - Wikipedia

    en.wikipedia.org/wiki/Talk:Chemical_graph_generator

    A fact from Chemical graph generator appeared on Wikipedia's Main Page in the Did you know column on 21 March 2021 (check views).The text of the entry was as follows: Did you know... that one of the first generators of chemical graphs (example pictured) was developed in the context of NASA's Mariner program to facilitate the automated identification of chemical compounds in the search for life ...

  9. Bjerrum plot - Wikipedia

    en.wikipedia.org/wiki/Bjerrum_plot

    Example Bjerrum plot: Change in carbonate system of seawater from ocean acidification.. A Bjerrum plot (named after Niels Bjerrum), sometimes also known as a Sillén diagram (after Lars Gunnar Sillén), or a Hägg diagram (after Gunnar Hägg) [1] is a graph of the concentrations of the different species of a polyprotic acid in a solution, as a function of pH, [2] when the solution is at ...