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Pandas (styled as pandas) is a software library written for the Python programming language for data manipulation and analysis. In particular, it offers data structures and operations for manipulating numerical tables and time series. It is free software released under the three-clause BSD license. [2]
JSON or JavaScript Object Notation, is an open standard format that uses human-readable text to transmit data objects. JSON has been popularized by web services developed utilizing REST principles. Databases such as MongoDB and Couchbase store data natively in JSON format, leveraging the pros of semi-structured data architecture.
orfipy is a tool written in Python / Cython to extract ORFs in an extremely and fast and flexible manner. [22] orfipy can work with plain or gzipped FASTA and FASTQ sequences, and provides several options to fine-tune ORF searches; these include specifying the start and stop codons, reporting partial ORFs, and using custom translation tables ...
The nested set model is a technique for representing nested set collections (also known as trees or hierarchies) in relational databases. It is based on Nested Intervals, that "are immune to hierarchy reorganization problem, and allow answering ancestor path hierarchical queries algorithmically — without accessing the stored hierarchy relation".
To start a new table row, type a vertical bar and a hyphen on its own line: "|-". The codes for the cells in that row start on the next line. An id for § anchoring in-links, and § row style may be included on the same line. {| |+ The table's caption |-row code goes here |-next row code goes here |}
algorithm nested_loop_join is for each tuple r in R do for each tuple s in S do if r and s satisfy the join condition then yield tuple <r,s> This algorithm will involve n r *b s + b r block transfers and n r +b r seeks, where b r and b s are number of blocks in relations R and S respectively, and n r is the number of tuples in relation R.
Comma-separated values (CSV) is a text file format that uses commas to separate values, and newlines to separate records. A CSV file stores tabular data (numbers and text) in plain text, where each line of the file typically represents one data record.
In relational databases, nodes are typically represented as table rows, with indexed row IDs facilitating pointers between parents and children. Nodes can also be stored as items in an array, with relationships between them determined by their positions in the array (as in a binary heap).