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  2. Subcloning - Wikipedia

    en.wikipedia.org/wiki/Subcloning

    The number of copies of the gene is then amplified using polymerase chain reaction (PCR). Simultaneously, the same restriction enzymes are used to digest (cut) the destination. The idea behind using the same restriction enzymes is to create complementary sticky ends , which will facilitate ligation later on.

  3. Protein engineering - Wikipedia

    en.wikipedia.org/wiki/Protein_engineering

    Whole plasmid single PCR is also referred to as site directed mutagenesis (SDM). SDM products are subjected to Dpn endonuclease digestion. This digestion results in cleavage of only the parental strand, because the parental strand contains a GmATC which is methylated at N6 of adenine. SDM does not work well for large plasmids of over ten kilobases.

  4. Site-directed mutagenesis - Wikipedia

    en.wikipedia.org/wiki/Site-directed_mutagenesis

    The template DNA must be eliminated by enzymatic digestion with a restriction enzyme such as DpnI, which is specific for methylated DNA. All DNA produced from most Escherichia coli strains would be methylated; the template plasmid that is biosynthesized in E. coli will, therefore, be digested, while the mutated plasmid, which is generated in ...

  5. Cleaved amplified polymorphic sequence - Wikipedia

    en.wikipedia.org/wiki/Cleaved_Amplified...

    The cleaved amplified polymorphic sequence (CAPS) method is a technique in molecular biology for the analysis of genetic markers.It is an extension to the restriction fragment length polymorphism (RFLP) method, using polymerase chain reaction (PCR) to more quickly analyse the results.

  6. Combined bisulfite restriction analysis - Wikipedia

    en.wikipedia.org/wiki/Combined_Bisulfite...

    The first few steps of COBRA, and the molecular changes caused by each step to methylated and unmethylated CpG sites. Combined Bisulfite Restriction Analysis (or COBRA) is a molecular biology technique that allows for the sensitive quantification of DNA methylation levels at a specific genomic locus on a DNA sequence in a small sample of genomic DNA. [1]

  7. Uracil-DNA glycosylase - Wikipedia

    en.wikipedia.org/wiki/Uracil-DNA_glycosylase

    Uracil N-glycosylase (UNG) is utilized to eliminate carryover polymerase chain reaction (PCR) products in PCR. This method modifies PCR products such that in a new reaction, any residual products from previous PCR amplifications will be digested and prevented from amplifying, but the true DNA templates will be unaffected. [16]

  8. Restriction digest - Wikipedia

    en.wikipedia.org/wiki/Restriction_digest

    Restriction digest is most commonly used as part of the process of the molecular cloning of DNA fragment into a vector (such as a cloning vector or an expression vector).The vector typically contains a multiple cloning site where many restriction site may be found, and a foreign piece of DNA may be inserted into the vector by first cutting the restriction sites in the vector as well the DNA ...

  9. Polymerase chain reaction inhibitors - Wikipedia

    en.wikipedia.org/wiki/Polymerase_chain_reaction...

    PCR inhibitors are any factor which prevent the amplification of nucleic acids through the polymerase chain reaction (PCR). [1] PCR inhibition is the most common cause of amplification failure when sufficient copies of DNA are present. [2] PCR inhibitors usually affect PCR through interaction with DNA or interference with the DNA polymerase.