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The 1000 Plant Transcriptomes Initiative (1KP) was an international research effort to establish the most detailed catalogue of genetic variation in plants. It was announced in 2008 and headed by Gane Ka-Shu Wong and Michael Deyholos of the University of Alberta .
Crop plant: 714–758 Mbp: 27,421: 2013 [38] Chenopodium quinoa: Chenopodiaceae: Crop plant 1.39–1.50 Gb 44,776 2017 [39] 3,486 scaffolds, scaffold N50 of 3.84 Mb, 90% of the assembled genome is contained in 439 scaffolds [39] Amaranthus hypocondriacus: Amaranthaceae: Crop plant 403.9 Mb 23,847 2016 [40] 16 large scaffolds from 16.9 to 38.1 Mb.
queryable-rna-seq-database Formally known as the Queryable RNA-Seq Database, this system is designed to simplify the process of RNA-seq analysis by providing the ability upload the result data from RNA-Seq analysis into a database, store it, and query it in many different ways.
Avibase – the World Bird Database [4] Birds, distribution, taxonomy X Avibase is an extensive database information system about all birds of the world, containing over 27 million records about 10,000 species and 22,000 subspecies of birds, including distribution information for 20,000 regions, taxonomy, synonyms in several languages and more
The TIGR Plant Transcript Assemblies database in computational biology is a repository of sequences collected for the construction of transcript assemblies. [1]
For example, a database of SNPs used in Douglas fir breeding programs was created by de novo transcriptome analysis in the absence of a sequenced genome. [159] Similarly, genes that function in the development of cardiac, muscle, and nervous tissue in lobsters were identified by comparing the transcriptomes of the various tissue types without ...
It profiles plants that are invasive or noxious weeds, [3] threatened or endangered, [3] giving out data on worldwide distribution [3] of its habitat; as well as passport information. [6] GRIN also incorporates an Economic Plants Database. [3] The network is maintained by GRIN's Database Management Unit (GRIN/DBMU). [2]
In animals and plants, the "innovations" that cannot be examined in common model organisms include mimicry, mutualism, parasitism, and asexual reproduction. De novo transcriptome assembly is often the preferred method to studying non-model organisms, since it is cheaper and easier than building a genome, and reference-based methods are not ...