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Nitrification is the biological oxidation of ammonia to nitrate via the intermediary nitrite. Nitrification is an important step in the nitrogen cycle in soil. The process of complete nitrification may occur through separate organisms [1] or entirely within one organism, as in comammox bacteria. The transformation of ammonia to nitrite is ...
The evolutionary motivation for a decoupled, two-step nitrification reaction is an area of ongoing research. In 2015, it was discovered that the species Nitrospira inopinata possesses all the enzymes required for carrying out complete nitrification in one step, suggesting that this reaction does occur. [12] [13]
Nitrogen assimilation is the formation of organic nitrogen compounds like amino acids from inorganic nitrogen compounds present in the environment. Organisms like plants, fungi and certain bacteria that can fix nitrogen gas (N 2) depend on the ability to assimilate nitrate or ammonia for their needs.
It is now known that there is a more complex cycling of amino acids between Rhizobia bacteroids and plants. The plant provides amino acids to the bacteroids so ammonia assimilation is not required and the bacteroids pass amino acids (with the newly fixed nitrogen) back to the plant, thus forming an interdependent relationship. [25]
What characterizes an actinorhizal plant is the symbiotic relationship it forms with the bacteria Frankia, [9] in which they infect the roots of the plant. This relationship is what is responsible for the nitrogen-fixation qualities of the plants, and what makes them important to nitrogen-poor environments. [10]
The plant provides these cells with leghemoglobin, resulting in a distinct pink color. Zone IV—the senescent zone. Here plant cells and their bacteroid contents are being degraded. The breakdown of the heme component of leghemoglobin results in a visible greening at the base of the nodule.
Plants that contribute to nitrogen fixation include those of the legume family—Fabaceae— with taxa such as kudzu, clover, soybean, alfalfa, lupin, peanut and rooibos. [45] They contain symbiotic rhizobia bacteria within nodules in their root systems , producing nitrogen compounds that help the plant to grow and compete with other plants. [ 64 ]
One process utilizes fast growing nitrifiers utilizing nitrification of ammonia to nitrite and Anammox which is the denitrification of nitrite to atmospheric nitrogen using ammonia as an electron donor. The combination of the two processes allows for a more efficient conversion of ammonia and prevents a buildup of nitrate in the water.