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In biochemistry, denaturation is a process in which proteins or nucleic acids lose folded structure present in their native state due to various factors, including application of some external stress or compound, such as a strong acid or base, a concentrated inorganic salt, an organic solvent (e.g., alcohol or chloroform), agitation and radiation, or heat. [3]
This can be seen as a consequence of Le Chatelier's principle because the inhibitor binds to both the enzyme and the enzyme-substrate complex equally so that the equilibrium is maintained. However, since some enzyme is always inhibited from converting the substrate to product, the effective enzyme concentration is lowered.
Most enzymes are sensitive to pH and have specific ranges of activity. All have an optimum pH. The pH can stop enzyme activity by denaturating (altering) the three-dimensional shape of the enzyme by breaking ionic, and hydrogen bonds. Most enzymes function between a pH of 6 and 8; however pepsin in the stomach works best at a pH of 2 and ...
The conformational stability can be calculated for any denaturant concentration (including the stability at zero denaturant) from the fitted parameters and [] /. When combined with kinetic data on folding, the m -value can be used to roughly estimate the amount of buried hydrophobic surface in the folding transition state.
One of the most well known equations to describe single-substrate enzyme kinetics is the Michaelis-Menten equation. This equation relates the initial rate of reaction to the concentration of substrate present, and deviations of model can be used to predict competitive inhibition and non-competitive inhibition. The model takes the form of the ...
Presence of certain ions in the reaction vessel also affects specific activity of the enzyme. Small amounts of potassium chloride (KCl) and magnesium ion (Mg 2+) promote Taq's enzymatic activity. Taq polymerase is maximally activated at 50mM KCl, while optimal Mg 2+ concentration is determined by the concentration of nucleoside triphosphates (dNTPs
Reversible inhibition can be described quantitatively in terms of the inhibitor's binding to the enzyme and to the enzyme-substrate complex, and its effects on the kinetic constants of the enzyme. [ 24 ] : 6 In the classic Michaelis-Menten scheme (shown in the "inhibition mechanism schematic" diagram), an enzyme (E) binds to its substrate (S ...
The Michaelis–Menten Model can be an invaluable tool to understanding enzyme kinetics. According to this model, a plot of the reaction velocity (V 0) associated with the concentration [S] of the substrate can then be used to determine values such as V max, initial velocity, and K m (V max /2 or affinity of enzyme to substrate complex). [4]