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  2. QIIME - Wikipedia

    en.wikipedia.org/wiki/QIIME

    QIIME (English: / tʃ aɪ m / ch-eye-m) [1] is a bioinformatics data science platform, originally developed for analysis of high-throughput microbiome marker gene (e.g., 16S or 18S rRNA genes) amplicon sequencing data. There have been two major versions of the QIIME platform, QIIME 1 [2] and QIIME 2. [3]

  3. List of sequence alignment software - Wikipedia

    en.wikipedia.org/wiki/List_of_sequence_alignment...

    It can map Illumina and SOLiD reads. Unlike most mapping programs, speed increases for longer read lengths. Yes Free, GPL [49] PRIMEX Indexes the genome with a k-mer lookup table with full sensitivity up to an adjustable number of mismatches. It is best for mapping 15-60 bp sequences to a genome. No No Yes No, multiple processes per search 2003

  4. Binary Alignment Map - Wikipedia

    en.wikipedia.org/wiki/Binary_Alignment_Map

    Binary Alignment Map (BAM) is the comprehensive raw data of genome sequencing; [1] it consists of the lossless, compressed binary representation of the Sequence Alignment Map-files. [2] [3] BAM is the compressed binary representation of SAM (Sequence Alignment Map), a compact and index-able representation of nucleotide sequence alignments. [4]

  5. SAM (file format) - Wikipedia

    en.wikipedia.org/wiki/SAM_(file_format)

    Sequence Alignment Map (SAM) is a text-based format originally for storing biological sequences aligned to a reference sequence developed by Heng Li and Bob Handsaker et al. [1] It was developed when the 1000 Genomes Project wanted to move away from the MAQ mapper format and decided to design a new format.

  6. Category:Bioinformatics software - Wikipedia

    en.wikipedia.org/wiki/Category:Bioinformatics...

    Main page; Contents; Current events; Random article; About Wikipedia; Contact us; Pages for logged out editors learn more

  7. GIS file format - Wikipedia

    en.wikipedia.org/wiki/GIS_file_format

    MapInfo TAB format – MapInfo's vector data format using TAB, DAT, ID and MAP files; Measure Map Pro format – XML data format to store GIS data; National Transfer Format (NTF) – National Transfer Format (mostly used by the UK Ordnance Survey) Spatialite – a spatial extension to SQLite, providing vector geodatabase functionality.

  8. Epitope mapping - Wikipedia

    en.wikipedia.org/wiki/Epitope_mapping

    In immunology, epitope mapping is the process of experimentally identifying the binding site, or epitope, of an antibody on its target antigen (usually, on a protein). [ 1 ] [ 2 ] [ 3 ] Identification and characterization of antibody binding sites aid in the discovery and development of new therapeutics , vaccines , and diagnostics .

  9. MAP (file format) - Wikipedia

    en.wikipedia.org/wiki/MAP_(file_format)

    .map files are utalised by the software package Radiant, a game mapping Software package. This software is used as part of the mod tools for multiple Call of Duty titles..MAPs are also identified as color maps. An example of such software that supports .map files is SoundSpectrum's G-Force music visualizer. Another form of the .MAP file is for ...