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  2. Nucleotide excision repair - Wikipedia

    en.wikipedia.org/wiki/Nucleotide_excision_repair

    Nucleotide excision repair is a DNA repair mechanism. [2] DNA damage occurs constantly because of chemicals (e.g. intercalating agents ), radiation and other mutagens . Three excision repair pathways exist to repair single stranded DNA damage: Nucleotide excision repair (NER), base excision repair (BER), and DNA mismatch repair (MMR).

  3. Base excision repair - Wikipedia

    en.wikipedia.org/wiki/Base_excision_repair

    Base excision repair (BER) is a cellular mechanism, studied in the fields of biochemistry and genetics, that repairs damaged DNA throughout the cell cycle. It is responsible primarily for removing small, non-helix-distorting base lesions from the genome. The related nucleotide excision repair pathway repairs bulky helix-distorting lesions.

  4. DNA repair - Wikipedia

    en.wikipedia.org/wiki/DNA_repair

    Base excision repair (BER): damaged single bases or nucleotides are most commonly repaired by removing the base or the nucleotide involved and then inserting the correct base or nucleotide. In base excision repair, a glycosylase [ 18 ] enzyme removes the damaged base from the DNA by cleaving the bond between the base and the deoxyribose.

  5. DNA mismatch repair - Wikipedia

    en.wikipedia.org/wiki/DNA_mismatch_repair

    DNA mismatch repair (MMR) is a system for recognizing and repairing erroneous insertion, deletion, and mis-incorporation of bases that can arise during DNA replication and recombination, as well as repairing some forms of DNA damage. [1][2] Mismatch repair is strand-specific. During DNA synthesis the newly synthesised (daughter) strand will ...

  6. Nuclease - Wikipedia

    en.wikipedia.org/wiki/Nuclease

    Nucleotide excision repair, not to be confused with base excision repair, involves the removal and replacement of damaged nucleotides. Instances of crosslinking, adducts, and lesions (generated by ultraviolet light or reactive oxygen species) can trigger this repair pathway. Short stretches of single stranded DNA containing such damaged ...

  7. AP site - Wikipedia

    en.wikipedia.org/wiki/AP_site

    Simple representation of an AP site. In biochemistry and molecular genetics, an AP site (apurinic/apyrimidinic site), also known as an abasic site, is a location in DNA (also in RNA but much less likely) that has neither a purine nor a pyrimidine base, either spontaneously or due to DNA damage. It has been estimated that under physiological ...

  8. Excinuclease - Wikipedia

    en.wikipedia.org/wiki/Excinuclease

    Excinuclease. Excision endonuclease, also known as excinuclease or UV-specific endonuclease, is a nuclease (enzyme) which excises a fragment of nucleotides during DNA repair. The excinuclease cuts out a fragment by hydrolyzing two phosphodiester bonds, one on either side of the lesion in the DNA. This process is part of "nucleotide excision ...

  9. AP endonuclease - Wikipedia

    en.wikipedia.org/wiki/AP_endonuclease

    Ribbon diagram of APE1. PDB = 1de9. [1] Apurinic/apyrimidinic (AP) endonuclease is an enzyme that is involved in the DNA base excision repair pathway (BER). Its main role in the repair of damaged or mismatched nucleotides in DNA is to create a nick in the phosphodiester backbone of the AP site created when DNA glycosylase removes the damaged base.

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