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Biopython can read and write to a number of common sequence formats, including FASTA, FASTQ, GenBank, Clustal, PHYLIP and NEXUS. When reading files, descriptive information in the file is used to populate the members of Biopython classes, such as SeqRecord. This allows records of one file format to be converted into others.
In computer programming, indentation style is a convention, a.k.a. style, governing the indentation of blocks of source code.An indentation style generally involves consistent width of whitespace (indentation size) before each line of a block, so that the lines of code appear to be related, and dictates whether to use space or tab characters for the indentation whitespace.
libLAS is a library for reading and writing geospatial data encoded in the ASPRS laser (LAS) file format, versions 1.0, 1.1 and 1.2. LAS-formatted data is heavily used in lidar processing operations. The LAS format is a sequential binary format used to store data from sensors and as intermediate processing storage by some applications.
The NCAR Command Language (NCL) is used to analyze and visualize data in netCDF files (among other formats). The Python programming language can access netCDF files with the PyNIO [14] module (which also facilitates access to a variety of other data formats). netCDF files can also be read with the Python module netCDF4-python, [15] and into a ...
reStructuredText (RST, ReST, or reST) is a file format for textual data used primarily in the Python programming language community for technical documentation.. It is part of the Docutils project of the Python Doc-SIG (Documentation Special Interest Group), aimed at creating a set of tools for Python similar to Javadoc for Java or Plain Old Documentation (POD) for Perl.
hOCR is an open standard of data representation for formatted text obtained from optical character recognition (OCR). The definition encodes text, style, layout information, recognition confidence metrics and other information using Extensible Markup Language (XML) in the form of Hypertext Markup Language (HTML) or XHTML.
Introduced in Python 2.2 as an optional feature and finalized in version 2.3, generators are Python's mechanism for lazy evaluation of a function that would otherwise return a space-prohibitive or computationally intensive list. This is an example to lazily generate the prime numbers:
[5] [6] [7] A line comment ends at the end of the text line. In modern languages, a line comment starts with a delimiter but some older languages designate a column at which subsequent text is considered comment. [7] Many languages support both block and line comments – using different delimiters for each.