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This is a list of graphical methods with a mathematical basis. Included are diagram techniques, chart techniques, plot techniques, and other forms of visualization . There is also a list of computer graphics and descriptive geometry topics .
One way to visualize the similarity between two protein or nucleic acid sequences is to use a similarity matrix, known as a dot plot. These were introduced by Gibbs and McIntyre in 1970 [1] and are two-dimensional matrices that have the sequences of the proteins being compared along the vertical and horizontal axes.
Isoclines are often used as a graphical method of solving ordinary differential equations. In an equation of the form y' = f(x, y), the isoclines are lines in the (x, y) plane obtained by setting f(x, y) equal to a constant. This gives a series of lines (for different constants) along which the solution curves have the same gradient.
There are some other proven and widely used methods of nature inspired global search techniques such as Memetic algorithm – A hybrid method, inspired by Richard Dawkins's notion of a meme. It commonly takes the form of a population-based algorithm (frequently an EA) coupled with individual learning procedures capable of performing local ...
An issue tree, also called logic tree, is a graphical breakdown of a question that dissects it into its different components vertically and that progresses into details as it reads to the right. [1]: 47 Issue trees are useful in problem solving to identify the root causes of a problem as well as to identify its potential solutions. They also ...
Bland–Altman plot : In analytical chemistry and biostatistics this plot is a method of data plotting used in analysing the agreement between two different assays. It is identical to a Tukey mean-difference plot , which is what it is still known as in other fields, but was popularised in medical statistics by Bland and Altman.
Graph attention network is a combination of a GNN and an attention layer. The implementation of attention layer in graphical neural networks helps provide attention or focus to the important information from the data instead of focusing on the whole data. A multi-head GAT layer can be expressed as follows:
Bioinformatics entails the creation and advancement of databases, algorithms, computational and statistical techniques, and theory to solve formal and practical problems arising from the management and analysis of biological data.