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An interactive viewer for large phylogenetic trees and networks: All [22] DensiTree A viewer capable of viewing multiple overlaid trees. All [23] FigTree: Simple Java tree viewer able to read newick and nexus tree files. Can be used to color branches and produce vector artwork. All [24] JEvTrace
Tree calculation tool calculates phylogenetic tree using BioJava API and lets user draw trees using Archaeopteryx: Software is package of 7 interactive visual tools for multiple sequence alignments. Major focus is manipulating large alignments. Includes MSApad, MSA comparator, MSA reconstruction tool, FASTA generator and MSA ID matrix calculator
View history; Tools. Tools. move to sidebar hide. Actions ... JSON grew out of a need for a real-time server-to-browser session communication protocol without using ...
Archaeopteryx is an interactive computer software program, written in Java, for viewing, editing, and analyzing phylogenetic trees.This type of program can be used for a variety of analyses of molecular data sets, but is particularly designed for phylogenomics.
Tree-sitter parsers have been written for these languages and many others. [11] GitHub uses Tree-sitter to support in-browser symbolic code navigation in Git repositories. [12] Tree-sitter uses a GLR parser, a type of LR parser. [13] [14] [12] Tree-sitter was originally developed by GitHub for use in the Atom text editor, where it was first ...
JSONiq [11] is a query and transformation language for JSON. XPath 3.1 [12] is an expression language that allows the processing of values conforming to the XDM [13] data model. The version 3.1 of XPath supports JSON as well as XML. jq is like sed for JSON data – it can be used to slice and filter and map and transform structured data.
ESLint – JavaScript syntax checker and formatter. Google's Closure Compiler – JavaScript optimizer that rewrites code to be faster and smaller, and checks use of native JavaScript functions. CodeScene – Behavioral analysis of code. JSHint – A community driven fork of JSLint. JSLint – JavaScript syntax checker and validator. Klocwork
Dendroscope is an interactive computer software program written in Java for viewing Phylogenetic trees. [1] This program is designed to view trees of all sizes and is very useful for creating figures.