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2. Swiss-model - Wikipedia

   en.wikipedia.org/wiki/Swiss-model

   The Swiss-model Workspace integrates programs and databases required for protein structure prediction and modelling in a web-based workspace. Depending on the complexity of the modelling task, different modes of use can be applied, in which the user has different levels of control over individual modelling steps: automated mode, alignment mode, and project mode.

3. List of protein subcellular localization prediction tools

   en.wikipedia.org/wiki/List_of_protein_sub...

   WoLF PSORT is an extension of the PSORT II program for protein subcellular location prediction. (bio.tools entry) [117] https://wolfpsort.hgc.jp/ 2007 YLoc: YLoc is a web server for the prediction of subcellular localization. Predictions are explained and biological properties used for the prediction highlighted.

4. RaptorX - Wikipedia

   en.wikipedia.org/wiki/RaptorX

   An email is sent to the user together with a link to a web page of results. RaptorX Server currently generates the following results: 3-state and 8-state secondary structure prediction, sequence-template alignment, 3D structure prediction, solvent accessibility prediction, disorder prediction and binding site prediction.

5. Protein–protein interaction prediction - Wikipedia

   en.wikipedia.org/wiki/Protein–protein...

   Protein–protein interaction prediction is a field combining bioinformatics and structural biology in an attempt to identify and catalog physical interactions between pairs or groups of proteins. Understanding protein–protein interactions is important for the investigation of intracellular signaling pathways, modelling of protein complex ...

6. List of protein structure prediction software - Wikipedia

   en.wikipedia.org/wiki/List_of_protein_structure...

   Remote template detection, single-template and multi-template threading, totally different from and much better than the old program RAPTOR designed by the same group: Webserver with job manager, automatically updated fold library HHpred: Template detection, alignment, 3D modeling: Interactive webserver with help facility Phyre, Phyre2

7. Protein contact map - Wikipedia

   en.wikipedia.org/wiki/Protein_contact_map

   Knowledge of the relationship between a protein's structure and its dynamic behavior is essential for understanding protein function. The description of a protein three dimensional structure as a network of hydrogen bonding interactions (HB plot) [12] was introduced as a tool for exploring protein structure and function. By analyzing the ...