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2. Swiss-model - Wikipedia

   en.wikipedia.org/wiki/Swiss-model

   The Swiss-model Workspace integrates programs and databases required for protein structure prediction and modelling in a web-based workspace. Depending on the complexity of the modelling task, different modes of use can be applied, in which the user has different levels of control over individual modelling steps: automated mode, alignment mode, and project mode.

3. List of protein subcellular localization prediction tools

   en.wikipedia.org/wiki/List_of_protein_sub...

   This list of protein subcellular localisation prediction tools includes software, databases, and web services that are used for protein subcellular localization prediction. Some tools are included that are commonly used to infer location through predicted structural properties, such as signal peptide or transmembrane helices , and these tools ...

4. List of protein structure prediction software - Wikipedia

   en.wikipedia.org/wiki/List_of_protein_structure...

   Remote template detection, single-template and multi-template threading, totally different from and much better than the old program RAPTOR designed by the same group: Webserver with job manager, automatically updated fold library HHpred: Template detection, alignment, 3D modeling: Interactive webserver with help facility Phyre, Phyre2

5. RaptorX - Wikipedia

   en.wikipedia.org/wiki/RaptorX

   An email is sent to the user together with a link to a web page of results. RaptorX Server currently generates the following results: 3-state and 8-state secondary structure prediction, sequence-template alignment, 3D structure prediction, solvent accessibility prediction, disorder prediction and binding site prediction.

6. Protein–protein interaction prediction - Wikipedia

   en.wikipedia.org/wiki/Protein–protein...

   Protein–protein interaction prediction is a field combining bioinformatics and structural biology in an attempt to identify and catalog physical interactions between pairs or groups of proteins. Understanding protein–protein interactions is important for the investigation of intracellular signaling pathways, modelling of protein complex ...

7. Phyre - Wikipedia

   en.wikipedia.org/wiki/Phyre

   The Phyre and Phyre2 servers predict the three-dimensional structure of a protein sequence using the principles and techniques of homology modeling.Because the structure of a protein is more conserved in evolution than its amino acid sequence, a protein sequence of interest (the target) can be modeled with reasonable accuracy on a very distantly related sequence of known structure (the ...