Ads
related to: protein binding affinity database
Search results
Results From The WOW.Com Content Network
The PDBbind database is a comprehensive collection of experimentally measured binding affinity data (Kd, Ki, and IC50) for the protein-ligand complexes deposited in the Protein Data Bank (PDB). [ 1 ] [ 2 ] It thus provides a link between energetic and structural information of protein-ligand complexes, which is of great value to various studies ...
A NIST-sponsored workshop in September 1997 validated the concept, and funding from the NSF and NIST enabled initial development of the database with a collection of data for systems of many types, including protein-ligand, protein-protein, and host–guest binding. However, hopes that the database would be populated primarily through ...
In protein-ligand binding, the ligand is usually a molecule which produces a signal by binding to a site on a target protein. The binding typically results in a change of conformational isomerism (conformation) of the target protein. In DNA-ligand binding studies, the ligand can be a small molecule, ion, [1] or protein [2] which binds to the ...
The two proteins are then mixed and the data outputs the fraction of the labeled protein that is unbound and bound to the other protein, allowing you to get a measure of K D and binding affinity. You can also take time-course measurements to characterize binding kinetics.
Machine-learning scoring functions have consistently been found to outperform classical scoring functions at binding affinity prediction of diverse protein-ligand complexes. [ 17 ] [ 18 ] This has also been the case for target-specific complexes, [ 19 ] [ 20 ] although the advantage is target-dependent and mainly depends on the volume of ...
Lectins is a generic name for proteins with carbohydrate-recognizing domains (CRD). Although it became almost synonymous with glycan-binding proteins, it does not include antibodies which also belong to the class. Lectins found in plants and fungi cells have been extensively used in research as a tool to detect, purify, and analyze glycans.