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  2. Phylogenetic tree - Wikipedia

    en.wikipedia.org/wiki/Phylogenetic_tree

    A phylogenetic tree, phylogeny or evolutionary tree is a graphical representation which shows the evolutionary history between a set of species or taxa during a specific time. [ 1 ][ 2 ] In other words, it is a branching diagram or a tree showing the evolutionary relationships among various biological species or other entities based upon ...

  3. Phylogenesis - Wikipedia

    en.wikipedia.org/wiki/Phylogenesis

    Phylogenesis (from Greek φῦλον phylon "tribe" + γένεσις genesis "origin") is the biological process by which a taxon (of any rank) appears. The science that studies these processes is called phylogenetics. [1][2][3][4][5] These terms may be confused with the term phylogenetics, the application of molecular - analytical methods (i.e ...

  4. Clade - Wikipedia

    en.wikipedia.org/wiki/Clade

    The science that tries to reconstruct phylogenetic trees and thus discover clades is called phylogenetics or cladistics, the latter term coined by Ernst Mayr (1965), derived from "clade". The results of phylogenetic/cladistic analyses are tree-shaped diagrams called cladograms; they, and all their branches, are phylogenetic hypotheses. [12]

  5. Phylogenetics - Wikipedia

    en.wikipedia.org/wiki/Phylogenetics

    In biology, phylogenetics (/ ˌ f aɪ l oʊ dʒ ə ˈ n ɛ t ɪ k s,-l ə-/) [1] [2] [3] is the study of the evolutionary history and relationships among or within groups of organisms.These relationships are determined by phylogenetic inference, methods that focus on observed heritable traits, such as DNA sequences, protein amino acid sequences, or morphology.

  6. Systematics - Wikipedia

    en.wikipedia.org/wiki/Systematics

    Systematics is the study of the diversification of living forms, both past and present, and the relationships among living things through time. Relationships are visualized as evolutionary trees (synonyms: phylogenetic trees, phylogenies). Phylogenies have two components: branching order (showing group relationships, graphically represented in ...

  7. Long branch attraction - Wikipedia

    en.wikipedia.org/wiki/Long_branch_attraction

    Long branches are often attracted to the base of a phylogenetic tree, because the lineage included to represent an outgroup is often also long-branched. The frequency of true LBA is unclear and often debated, [ 1 ] [ 2 ] [ 3 ] and some authors view it as untestable and therefore irrelevant to empirical phylogenetic inference. [ 4 ]

  8. Distance matrices in phylogeny - Wikipedia

    en.wikipedia.org/wiki/Distance_matrices_in_phylogeny

    Distance matrices are used in phylogeny as non-parametric distance methods and were originally applied to phenetic data using a matrix of pairwise distances. These distances are then reconciled to produce a tree (a phylogram, with informative branch lengths). The distance matrix can come from a number of different sources, including measured ...

  9. Bayesian inference in phylogeny - Wikipedia

    en.wikipedia.org/wiki/Bayesian_inference_in...

    As shown by Felsenstein (1978), MP might be statistically inconsistent, [15] meaning that as more and more data (e.g. sequence length) is accumulated, results can converge on an incorrect tree and lead to long branch attraction, a phylogenetic phenomenon where taxa with long branches (numerous character state changes) tend to appear more ...