Search results
Results From The WOW.Com Content Network
These files are generated as output by short read aligners like BWA. Both simple and advanced tools are provided, supporting complex tasks like variant calling and alignment viewing as well as sorting, indexing, data extraction and format conversion. [3] SAM files can be very large (tens of Gigabytes is common), so compression is used to save ...
The binary equivalent of a SAM file is a Binary Alignment Map (BAM) file, which stores the same data in a compressed binary representation. [4] SAM files can be analysed and edited with the software SAMtools. [1] The header section must be prior to the alignment section if it is present.
Slider is an application for the Illumina Sequence Analyzer output that uses the "probability" files instead of the sequence files as an input for alignment to a reference sequence or a set of reference sequences. Yes Yes No No [53] [54] 2009-2010 SOAP, SOAP2, SOAP3, SOAP3-dp SOAP: robust with a small (1-3) number of gaps and mismatches.
The germline pipeline operates on the FASTQ files provided as input by the user to call the variants that, belonging to the germ line, can be inherited. [ 13 ] This pipeline analyzes data computing the read alignment with BWA-MEM [ 16 ] [ 17 ] and calling variants using GATK HaplotypeCaller, [ 18 ] one of the most relevant tools in the domain ...
A SÜSS MicroTec MA6 mask aligner. An aligner, or mask aligner, is a system that produces integrated circuits (IC) using the photolithography process. It holds the photomask over the silicon wafer while a bright light is shone through the mask and onto the photoresist. The "alignment" refers to the ability to place the mask over precisely the ...
UpdateStar is a freeware software application providing update information for approximately 1.3 million software programs. [1] Implementing a social computing aspect, the update database is maintained by the users. UpdateStar uses advertising to refinance the free service and shares ad revenue 50/50 with the software authors via their Share ...
One characteristic feature of the STAR File format is that data names (keys in key–value pairs) start with the underscore. They are separated from data values only by white space, for example: _format "STAR File" _first_published 1991 The format was designed to provide a concise syntax for tabular data. The construct for this is called loop.
This is the purpose of the aligner, a task that was originally completed manually using a microscope. [ 3 ] There is a strong economic argument to use larger wafers, as more individual IC's can be patterned on the surface and produced in a single series of operations, thereby producing more chips during the same period of time.