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  2. Template modeling score - Wikipedia

    en.wikipedia.org/wiki/Template_modeling_score

    The TM-score indicates the similarity between two structures by a score between (,], where 1 indicates a perfect match between two structures (thus the higher the better). [1] Generally scores below 0.20 corresponds to randomly chosen unrelated proteins whereas structures with a score higher than 0.5 assume roughly the same fold. [ 2 ]

  3. Structural alignment software - Wikipedia

    en.wikipedia.org/wiki/Structural_alignment_software

    TM-align TM-score based protein structure alignment: Cα: Pair: nil: server and download: Y. Zhang & J. Skolnick: 2005 mTM-align Multiple protein structure alignment based on TM-align Cα Multi No server and download: R. Dong, Z. Peng, Y. Zhang & J. Yang 2018 VAST Vector Alignment Search Tool: SSE: Pair: nil: server: S. Bryant: 1996 PrISM

  4. Root mean square deviation of atomic positions - Wikipedia

    en.wikipedia.org/wiki/Root_mean_square_deviation...

    TM-score – a different structure comparison measure; Longest continuous segment (LCS) — A different structure comparison measure; Global distance calculation (GDC_sc, GDC_all) — Structure comparison measures that use full-model information (not just α-carbon) to assess similarity

  5. T-Coffee - Wikipedia

    en.wikipedia.org/wiki/T-Coffee

    Transitive Consistency Score (TCS) is an extended version of the T-Coffee scoring scheme. [14] It uses T-Coffee libraries of pairwise alignments to evaluate any third party MSA. Pairwise projections can be produced using fast or slow methods, thus allowing a trade-off between speed and accuracy.

  6. Phred quality score - Wikipedia

    en.wikipedia.org/wiki/Phred_quality_score

    Phred quality scores shown on a DNA sequence trace. A Phred quality score is a measure of the quality of the identification of the nucleobases generated by automated DNA sequencing. [1] [2] It was originally developed for the computer program Phred to help in the automation of DNA sequencing in the Human Genome Project.

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  8. Score test - Wikipedia

    en.wikipedia.org/wiki/Score_test

    If the null hypothesis is true, the likelihood ratio test, the Wald test, and the Score test are asymptotically equivalent tests of hypotheses. [8] [9] When testing nested models, the statistics for each test then converge to a Chi-squared distribution with degrees of freedom equal to the difference in degrees of freedom in the two models. If ...

  9. Wikipedia:Graphs and charts - Wikipedia

    en.wikipedia.org/wiki/Wikipedia:Graphs_and_charts

    When making a pie chart, ensure that the segments are ordered by size (largest to smallest) and in a clockwise direction. [clarification needed] Setting the other parameter to yes will pad the chart so that the values total to 100. This example was created by typing the following code: