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List of phylogenetics software. This list of phylogenetics software is a compilation of computational phylogenetics software used to produce phylogenetic trees. Such tools are commonly used in comparative genomics, cladistics, and bioinformatics. Methods for estimating phylogenies include neighbor-joining, maximum parsimony (also simply ...
Generator matrix. In coding theory, a generator matrix is a matrix whose rows form a basis for a linear code. The codewords are all of the linear combinations of the rows of this matrix, that is, the linear code is the row space of its generator matrix.
Formally, a parity check matrix H of a linear code C is a generator matrix of the dual code, C ⊥. This means that a codeword c is in C if and only if the matrix-vector product Hc ⊤ = 0 (some authors [1] would write this in an equivalent form, cH ⊤ = 0.) The rows of a parity check matrix are the coefficients of the parity check equations. [2]
De facto standard for matrix/tensor operations in Python. Pandas, a library for data manipulation and analysis. SageMath is a large mathematical software application which integrates the work of nearly 100 free software projects and supports linear algebra, combinatorics, numerical mathematics, calculus, and more. [15]
GOMA is an open-source, parallel, and scalable multiphysics software package for modeling and simulation of real-life physical processes, with a basis in computational fluid dynamics for problems with evolving geometry. A generic finite element library written in C++ with interfaces for Python, Matlab and Scilab.
Gell-Mann matrices. The Gell-Mann matrices, developed by Murray Gell-Mann, are a set of eight linearly independent 3×3 traceless Hermitian matrices used in the study of the strong interaction in particle physics. They span the Lie algebra of the SU (3) group in the defining representation.
Let X be an affine space over a field k, and V be its associated vector space. An affine transformation is a bijection f from X onto itself that is an affine map; this means that a linear map g from V to V is well defined by the equation () = (); here, as usual, the subtraction of two points denotes the free vector from the second point to the first one, and "well-defined" means that ...
The Initial and Final States of the interaction relate through the so-called scattering matrix . For example, at LEP, e + + e − → e + + e −, or e + + e − → μ + + μ − are processes where the initial state is an electron and a positron colliding to produce an electron and a positron or two muons of opposite charge: the final states.