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ggplot2 is an open-source data visualization package for the statistical programming language R.Created by Hadley Wickham in 2005, ggplot2 is an implementation of Leland Wilkinson's Grammar of Graphics—a general scheme for data visualization which breaks up graphs into semantic components such as scales and layers. ggplot2 can serve as a replacement for the base graphics in R and contains a ...
A violin plot (on the left) and a sina plot (on the right) for the same sample. A sina plot is a type of diagram in which numerical data are depicted by points distributed in such a way that the width of the point distribution is proportional to the kernel density.
# set terminal svg enhanced size 875 1250 fname "Times" fsize 25 set terminal postscript enhanced portrait dashed lw 1 "Helvetica" 14 set output "bode.ps" # ugly part of something G(w,n) = 0 * w * n + 100000 # 1 / (sqrt(1 + w**(2*n))) dB(x) = 0 + x + 100000 # 20 * log10(abs(x)) P(w) = w * 0 + 200 # -atan(w)*180/pi # Gridlines set grid # Set x axis to logarithmic scale set logscale x 10 set ...
gnuplot is a command-line and GUI program that can generate two- and three-dimensional plots of functions, data, and data fits.The program runs on all major computers and operating systems (Linux, Unix, Microsoft Windows, macOS, FreeDOS, and many others). [3]
By minimizing these systematic variations, true biological differences can be found. To determine whether normalization is needed, one can plot Cy5 (R) intensities against Cy3 (G) intensities and see whether the slope of the line is around 1. An improved method, which is basically a scaled, 45 degree rotation of the R vs. G plot is an MA-plot. [4]
Violin plots are similar to box plots, except that they also show the probability density of the data at different values, usually smoothed by a kernel density estimator.A violin plot will include all the data that is in a box plot: a marker for the median of the data; a box or marker indicating the interquartile range; and possibly all sample points, if the number of samples is not too high.
[1] [2] [3] Assuming a variable is homoscedastic when in reality it is heteroscedastic (/ ˌ h ɛ t ər oʊ s k ə ˈ d æ s t ɪ k /) results in unbiased but inefficient point estimates and in biased estimates of standard errors, and may result in overestimating the goodness of fit as measured by the Pearson coefficient.
The "glu" data were obtained from the MASS package [4] of the R programming language. Within R, ?Pima.tr and ?Pima.te give a fuller account of the data. The mean of "glu" in the diabetes cases is 143.1 and the standard deviation is 31.26. The mean of "glu" in the non-diabetes cases is 110.0 and the standard deviation is 24.29.