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Software platform, allows organizations to integrate, analyze, and share complex biomedical data Linux, macOS, Windows: Apache: LabKey Software Foundation LAMMPS: Molecular dynamics program written in C++: Linux, macOS, Windows: Apache: Sandia National Laboratories. mothur: Software for analysis of 16S rRNA gene amplicon sequence data Linux ...
The advantage of using standard formats is that even though a particular software application may eventually become unsupported and even unusable, the models developed by that application can be easily transferred to more modern equivalents. This allows scientific research to be reproducible long after the original publication of the work.
Starting with version 2.7.5, a GPL is the only license valid for binary distributions. RasMol includes a scripting language , to perform many functions such as selecting certain protein chains, changing colors, etc. Jmol and Sirius software have incorporated this language into their commands.
Typically, this means software which is distributed with a free software license, and whose source code is available to anyone who receives a copy of the software. Free application software forms a tree, with a structure identical (when the same pages exist in both) to that of Category:Application software. See that category's page for an ...
AnalyzerPro is a vendor-independent software application from SpectralWorks for processing mass spectrometry data. It can process both GC-MS and LC-MS data using qualitative and quantitative data processing and is used in metabolomics with MatrixAnalyzer for the comparison of multiple data sets.
Salmon is a software tool for computing transcript abundance from RNA-seq data using either an alignment-free (based directly on the raw reads) or an alignment-based (based on pre-computed alignments) approach. It uses an online stochastic optimization approach to maximize the likelihood of the transcript abundances under the observed data.
List of protein structure prediction software; Category:Molecular dynamics software; Structural alignment software; Other. Compression of genomic sequencing data; Bioinformatics workflow management system; List of genetic engineering software; List of systems biology visualization software; List of systems biology modelling software; 2D gel ...
Software Description Platform License Developer Abalone: A general purpose molecular dynamics and molecular graphics program for simulations of bio-molecules x86, Nvidia GPU CUDA Proprietary Agile Molecule [1] [2] TINKER: A molecular dynamics simulator with a complete and general package for molecular mechanics and molecular dynamics.